Back to Long Tests report for BioC 3.22

This page was generated on 2025-07-12 23:55 -0400 (Sat, 12 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4783
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4520
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4564
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-07-12 09:55 -0400 (Sat, 12 Jul 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-07-12 16:01:06 -0400 (Sat, 12 Jul 2025)
EndedAt: 2025-07-12 16:02:40 -0400 (Sat, 12 Jul 2025)
EllapsedTime: 94.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


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Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-07-12 16:01:38.489][biodb::testContext]
biodb.INFO [2025-07-12 16:01:38.491][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-12 16:01:38.492][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-07-12 16:01:38.493][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-12 16:01:38.494][biodb::testContext]
biodb.INFO [2025-07-12 16:01:38.501][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-07-12 16:01:38.503][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-07-12 16:01:38.510][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:38.511][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-07-12 16:01:38.512][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.516][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-07-12 16:01:38.536][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.540][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-07-12 16:01:38.541][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.545][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-07-12 16:01:38.546][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-07-12 16:01:38.548][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-07-12 16:01:38.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.551][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-07-12 16:01:38.552][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-07-12 16:01:38.554][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.557][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-07-12 16:01:38.558][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-07-12 16:01:38.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.562][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-07-12 16:01:38.563][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-07-12 16:01:38.564][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-07-12 16:01:38.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.576][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-07-12 16:01:38.577][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.580][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-07-12 16:01:38.581][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-07-12 16:01:38.582][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-07-12 16:01:38.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.585][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-07-12 16:01:38.586][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-07-12 16:01:38.587][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-07-12 16:01:38.587][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-07-12 16:01:38.588][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-07-12 16:01:38.589][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-07-12 16:01:38.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.592][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-07-12 16:01:38.593][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-07-12 16:01:38.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.596][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-07-12 16:01:38.597][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-07-12 16:01:38.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.601][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-07-12 16:01:38.602][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-07-12 16:01:38.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.605][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-07-12 16:01:38.606][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-07-12 16:01:38.607][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-07-12 16:01:38.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.610][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-07-12 16:01:38.611][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-07-12 16:01:38.615][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-07-12 16:01:38.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.618][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-07-12 16:01:38.619][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-07-12 16:01:38.620][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-07-12 16:01:38.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.626][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-07-12 16:01:38.656][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.670][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-07-12 16:01:38.671][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.672][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:38.673][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.674][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.675][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.676][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.677][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-12 16:01:38.677][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:38.678][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.679][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-07-12 16:01:38.680][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:38.681][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.682][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.683][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:38.683][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:38.683][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:38.683][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-12 16:01:38.683][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-12 16:01:38.684][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:38.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.686][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:38.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.688][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.689][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.690][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.690][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:38.691][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:38.692][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.693][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.694][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-07-12 16:01:38.696][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.697][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-07-12 16:01:38.698][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.698][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:38.699][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.700][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.702][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.703][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-12 16:01:38.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:38.705][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.706][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-07-12 16:01:38.706][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:38.707][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.708][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.709][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:38.709][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:38.709][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:38.709][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-12 16:01:38.709][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-12 16:01:38.710][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:38.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.712][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.713][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:38.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.715][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.716][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.717][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:38.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:38.719][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.719][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.720][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-07-12 16:01:38.722][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.723][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-07-12 16:01:38.724][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.725][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:38.726][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.727][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.727][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.728][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.729][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-12 16:01:38.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:38.731][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.732][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-07-12 16:01:38.733][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:38.734][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.735][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.735][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.736][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:38.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.738][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.739][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:38.740][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.741][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.742][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.743][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:38.744][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:38.745][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.746][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.747][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-07-12 16:01:38.748][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.749][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-07-12 16:01:38.750][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.751][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:38.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.754][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.754][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.755][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-12 16:01:38.756][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:38.757][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.758][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-07-12 16:01:38.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:38.760][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.761][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:38.762][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.762][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:38.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.765][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:38.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:38.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:38.772][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:38.772][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:38.774][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:38.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:38.776][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:38.779][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:38.780][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.845][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-07-12 16:01:38.850][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-07-12 16:01:38.851][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-07-12 16:01:38.852][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-07-12 16:01:38.854][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-12 16:01:38.855][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-07-12 16:01:38.856][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-07-12 16:01:38.857][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-07-12 16:01:38.859][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-07-12 16:01:38.860][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-07-12 16:01:38.861][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-12 16:01:38.862][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-07-12 16:01:38.864][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-07-12 16:01:38.865][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-07-12 16:01:38.866][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-07-12 16:01:38.867][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-07-12 16:01:38.869][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-07-12 16:01:38.870][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-07-12 16:01:38.871][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-12 16:01:38.872][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-07-12 16:01:38.874][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-07-12 16:01:38.875][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-07-12 16:01:38.876][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-07-12 16:01:38.878][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-07-12 16:01:38.879][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-07-12 16:01:38.880][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-07-12 16:01:38.881][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-07-12 16:01:38.883][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-07-12 16:01:38.884][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-07-12 16:01:38.885][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-07-12 16:01:38.886][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-07-12 16:01:38.888][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-07-12 16:01:38.889][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-07-12 16:01:38.890][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-07-12 16:01:38.891][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-07-12 16:01:38.893][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-07-12 16:01:38.894][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-07-12 16:01:38.895][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-07-12 16:01:38.896][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-07-12 16:01:38.898][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-07-12 16:01:38.899][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-07-12 16:01:38.900][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-07-12 16:01:38.901][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-07-12 16:01:38.903][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-07-12 16:01:38.904][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-07-12 16:01:38.905][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-07-12 16:01:38.906][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-07-12 16:01:38.908][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-07-12 16:01:38.909][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-07-12 16:01:38.910][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-07-12 16:01:38.912][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-07-12 16:01:38.913][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-07-12 16:01:38.914][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-07-12 16:01:38.915][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-07-12 16:01:38.917][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-07-12 16:01:38.918][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-07-12 16:01:38.919][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-07-12 16:01:38.920][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-07-12 16:01:38.922][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-07-12 16:01:38.923][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-07-12 16:01:38.924][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-07-12 16:01:38.925][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-07-12 16:01:38.927][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-07-12 16:01:38.928][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-07-12 16:01:38.929][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-07-12 16:01:38.930][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-07-12 16:01:38.932][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-12 16:01:38.933][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-12 16:01:38.934][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-07-12 16:01:38.935][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-07-12 16:01:38.937][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-07-12 16:01:38.938][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-07-12 16:01:38.939][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-07-12 16:01:38.940][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-07-12 16:01:38.942][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-07-12 16:01:38.943][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-07-12 16:01:38.944][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-07-12 16:01:38.945][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-07-12 16:01:38.947][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-07-12 16:01:38.948][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-07-12 16:01:38.949][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-07-12 16:01:38.950][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-07-12 16:01:38.952][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-07-12 16:01:38.957][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-07-12 16:01:38.959][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-07-12 16:01:38.962][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:38.962][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.969][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:38.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:38.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:38.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:38.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:38.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:38.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:38.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:38.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:38.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:38.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:38.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:38.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:38.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:38.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:38.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:39.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:39.064][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-07-12 16:01:39.073][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-07-12 16:01:39.074][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:39.075][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-07-12 16:01:39.076][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:39.077][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:39.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:39.079][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:39.080][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:39.081][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-07-12 16:01:39.082][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-07-12 16:01:39.083][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:39.083][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:39.084][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-07-12 16:01:39.085][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-07-12 16:01:39.086][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-07-12 16:01:39.087][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:39.088][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:39.088][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:39.088][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:39.089][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-07-12 16:01:39.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:39.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:39.092][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:39.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:39.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:39.101][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:39.102][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-07-12 16:01:39.102][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-07-12 16:01:39.103][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:39.104][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:39.105][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:39.106][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-07-12 16:01:39.106][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-07-12 16:01:39.114][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-12 16:01:39.116][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-12 16:01:39.118][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-07-12 16:01:39.119][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-12 16:01:39.121][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-12 16:01:39.122][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-12 16:01:39.150][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-07-12 16:01:39.169][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-07-12 16:01:39.178][biodb::testThat]
biodb.INFO [2025-07-12 16:01:39.179][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-07-12 16:01:39.180][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:39.181][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:39.184][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-07-12 16:01:39.186][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:39.189][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:39.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:39.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:39.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:39.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:39.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:39.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:39.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:39.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.253][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.287][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.319][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:39.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.343][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:39.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.353][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:39.428][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-07-12 16:01:39.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.612][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.636][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.711][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.735][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.785][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.839][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:39.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:39.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.860][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:39.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:39.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:39.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:39.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:39.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:39.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:39.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:39.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:39.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:39.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:39.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:39.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:39.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.962][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:39.963][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:39.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:39.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:39.982][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-07-12 16:01:40.018][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:40.019][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:40.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:40.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:40.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:40.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:40.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:40.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:40.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:40.032][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.033][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.057][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.102][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.105][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.127][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:40.128][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:40.183][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-07-12 16:01:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.329][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.330][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.440][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.441][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.519][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.520][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.545][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.572][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.677][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.678][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.684][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.691][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.705][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.712][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.726][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.733][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.747][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-07-12 16:01:40.749][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:40.750][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:40.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:40.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:40.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:40.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:40.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:40.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:40.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:40.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.787][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.840][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:40.841][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.844][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:40.896][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-07-12 16:01:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:40.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:40.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:40.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:40.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:40.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.117][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.118][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.202][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.203][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.228][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.255][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.296][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.303][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.342][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.356][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.366][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.372][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:41.379][biodb::testThat]
biodb.INFO [2025-07-12 16:01:41.380][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-07-12 16:01:41.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:41.382][biodb::testThat]
biodb.DEBUG[2025-07-12 16:01:41.384][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-07-12 16:01:41.387][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-07-12 16:01:41.390][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:41.398][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-07-12 16:01:41.401][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-07-12 16:01:41.405][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-07-12 16:01:41.406][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:41.407][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-07-12 16:01:41.409][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:41.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:41.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:41.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:41.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:41.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:41.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:41.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:41.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.438][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.471][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.475][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.510][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:41.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:41.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:41.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:41.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:41.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:41.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:41.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:41.555][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.556][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.563][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.596][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.597][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.604][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.608][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.628][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.637][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:41.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:41.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:41.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:41.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:41.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:41.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:41.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:41.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.696][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:41.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.704][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:41.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:41.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.736][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.760][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:41.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:41.839][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-07-12 16:01:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:41.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:41.894][biodb::testThat]
biodb.INFO [2025-07-12 16:01:41.895][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-07-12 16:01:41.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:41.897][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:41.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.902][ef$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:41.904][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-07-12 16:01:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:41.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:41.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:41.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:41.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:41.943][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-07-12 16:01:41.949][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-07-12 16:01:41.969][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:41.976][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-07-12 16:01:41.977][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:41.996][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:42.032][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:42.036][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:42.037][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:42.039][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-07-12 16:01:42.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:42.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:42.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.053][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.056][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:42.060][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.061][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-07-12 16:01:42.062][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:42.063][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:42.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:42.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:42.156][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:42.160][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:42.161][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-07-12 16:01:42.176][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.177][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-07-12 16:01:42.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:42.179][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:42.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:42.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:42.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:42.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:42.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:42.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:42.286][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.287][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-07-12 16:01:42.288][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:42.289][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.297][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.298][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-07-12 16:01:42.299][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:42.300][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.306][biodb::testThat]
biodb.INFO [2025-07-12 16:01:42.307][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-07-12 16:01:42.308][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:42.309][biodb::testThat]
biodb.DEBUG[2025-07-12 16:01:42.313][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-07-12 16:01:44.704][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-07-12 16:01:46.240][biodb::testThat]
biodb.INFO [2025-07-12 16:01:46.242][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-07-12 16:01:46.244][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:46.246][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:46.255][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.266][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:46.268][biodb::testThat]
biodb.INFO [2025-07-12 16:01:46.270][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-07-12 16:01:46.271][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:46.272][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:46.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:46.392][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:46.395][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:46.396][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:46.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:46.479][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:46.482][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:46.483][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-07-12 16:01:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:46.525][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:46.528][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:46.530][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:01:46.531][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:46.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:46.542][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-07-12 16:01:46.589][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:46.590][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:46.593][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-07-12 16:01:46.594][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:46.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:46.597][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:46.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:46.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.616][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:46.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:46.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:46.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:46.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:46.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:46.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.650][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:46.651][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:46.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.665][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:46.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:46.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:46.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:46.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:46.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:46.727][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-07-12 16:01:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:46.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:46.750][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:46.752][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:01:46.753][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:46.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:46.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:46.796][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-07-12 16:01:46.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:46.798][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:46.801][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-07-12 16:01:46.802][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:46.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:46.805][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:46.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:46.816][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:46.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:46.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:46.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:46.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:46.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:46.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:46.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:46.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.857][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:46.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.876][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.884][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:46.885][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:46.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.891][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:46.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:46.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:46.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:46.935][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-07-12 16:01:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:46.962][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:46.965][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:46.968][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:46.969][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:46.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:46.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:46.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:46.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:46.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:46.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:46.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:46.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.000][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-07-12 16:01:47.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.003][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.006][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-07-12 16:01:47.012][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.013][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.014][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.025][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.032][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.051][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.067][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.114][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-07-12 16:01:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.143][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-07-12 16:01:47.144][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.145][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.149][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-07-12 16:01:47.150][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.153][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.168][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.176][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.192][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.195][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.210][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.258][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-07-12 16:01:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.287][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-07-12 16:01:47.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.289][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.293][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-07-12 16:01:47.294][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.296][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.332][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.333][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.348][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.349][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.351][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.367][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.368][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.371][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.415][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-07-12 16:01:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.445][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-07-12 16:01:47.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.447][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.452][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-07-12 16:01:47.453][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.479][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.517][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.540][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.591][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-07-12 16:01:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.612][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-07-12 16:01:47.613][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.614][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.619][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-07-12 16:01:47.623][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.625][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.626][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.652][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.683][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.690][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.691][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.706][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.757][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-07-12 16:01:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.782][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-07-12 16:01:47.783][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.784][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.788][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-07-12 16:01:47.789][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.791][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.802][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.817][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:47.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.844][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:47.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:47.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.922][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-07-12 16:01:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:47.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:47.942][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-07-12 16:01:47.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:47.945][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:47.949][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-07-12 16:01:47.950][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:47.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:47.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:47.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:47.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:47.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:47.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:47.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:47.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:47.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:47.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:47.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.005][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.013][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.014][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.083][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-07-12 16:01:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.104][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-07-12 16:01:48.105][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.106][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.110][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-07-12 16:01:48.111][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.125][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.128][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.132][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.166][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.174][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.181][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.189][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.244][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-07-12 16:01:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.266][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-07-12 16:01:48.266][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.268][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.271][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-07-12 16:01:48.272][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.275][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.286][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.294][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.320][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.325][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.328][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.344][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.406][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-07-12 16:01:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.428][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-07-12 16:01:48.428][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.430][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.434][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-07-12 16:01:48.435][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.448][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.505][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.516][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.567][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-07-12 16:01:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.588][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-07-12 16:01:48.589][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.590][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.593][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-07-12 16:01:48.594][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.615][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.616][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.639][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.642][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.645][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.715][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-07-12 16:01:48.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.736][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-07-12 16:01:48.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.739][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.741][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-07-12 16:01:48.742][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.743][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.765][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.790][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.817][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.818][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.864][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-07-12 16:01:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:48.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:48.885][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-07-12 16:01:48.886][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:48.887][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:48.891][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-07-12 16:01:48.892][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:48.893][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:48.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:48.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:48.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:48.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:48.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:48.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:48.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:48.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:48.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.921][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:48.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:48.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.947][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:48.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:48.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.025][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-07-12 16:01:49.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.046][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-07-12 16:01:49.047][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.048][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.052][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-07-12 16:01:49.053][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.074][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.082][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.089][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.090][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.097][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.109][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.110][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.112][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.135][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.186][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-07-12 16:01:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.207][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-07-12 16:01:49.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.209][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.213][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-07-12 16:01:49.214][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.216][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.236][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.273][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.288][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.295][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.347][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-07-12 16:01:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.368][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-07-12 16:01:49.369][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.370][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.374][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-07-12 16:01:49.375][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.376][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.377][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.389][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.400][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.403][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.408][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.433][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.449][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.456][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.508][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-07-12 16:01:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.529][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-07-12 16:01:49.530][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.531][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.535][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-07-12 16:01:49.536][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.537][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.554][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.562][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.577][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.595][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.624][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.625][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.683][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-07-12 16:01:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.722][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-07-12 16:01:49.723][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.725][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.728][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-07-12 16:01:49.730][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.731][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.732][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.745][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.753][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.761][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.812][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.868][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-07-12 16:01:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:49.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:49.889][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-07-12 16:01:49.890][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:49.891][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:49.894][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-07-12 16:01:49.895][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:49.896][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:49.898][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:49.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:49.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:49.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:49.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:49.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:49.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:49.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:49.909][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:49.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.950][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.954][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:49.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:49.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:49.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.029][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-07-12 16:01:50.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:50.055][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:50.058][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:50.061][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:50.062][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:50.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:50.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:50.556][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:50.558][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-07-12 16:01:50.559][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:50.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:50.563][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:50.566][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-07-12 16:01:50.567][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:50.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:50.578][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-07-12 16:01:50.579][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:50.581][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:50.585][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-07-12 16:01:50.590][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:50.591][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:50.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:50.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.604][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:50.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:50.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:50.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:50.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:50.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:50.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.649][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:50.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.664][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:50.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:50.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:50.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:50.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:50.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:50.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:50.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.723][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-07-12 16:01:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:50.769][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-07-12 16:01:50.770][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:50.771][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:50.775][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-07-12 16:01:50.776][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:50.777][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:50.778][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:50.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.797][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:50.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:50.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.805][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:50.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:50.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:50.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.831][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:50.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:50.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:50.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.854][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:50.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:50.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:50.863][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:50.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:50.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.910][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-07-12 16:01:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:50.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:50.939][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:50.943][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:50.943][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:50.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:50.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:50.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:50.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:50.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:50.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:50.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:50.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:50.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:51.399][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:51.401][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:51.404][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:51.405][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:51.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:51.861][biodb::testThat]
biodb.INFO [2025-07-12 16:01:51.862][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-07-12 16:01:51.863][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:51.864][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:51.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:51.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:51.941][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:51.943][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:01:51.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:51.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:51.966][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:51.969][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:51.971][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:01:51.972][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:51.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:51.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:51.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:51.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:51.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:51.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:51.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.014][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:52.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.033][private$selectFields]
biodb.TRACE[2025-07-12 16:01:52.034][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:52.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:52.035][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.048][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.049][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.054][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:52.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:01:52.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.092][private$selectFields]
biodb.TRACE[2025-07-12 16:01:52.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:52.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:52.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:52.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:01:52.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.138][private$selectFields]
biodb.TRACE[2025-07-12 16:01:52.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:52.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:52.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:52.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:01:52.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:52.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:52.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:52.187][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:52.189][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:52.191][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:01:52.192][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.203][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-07-12 16:01:52.204][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:52.205][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:52.208][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-07-12 16:01:52.209][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.211][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.212][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.223][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.231][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.238][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.265][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.296][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.345][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-07-12 16:01:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.365][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-07-12 16:01:52.366][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:52.368][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:52.371][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-07-12 16:01:52.372][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.394][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.394][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.401][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.409][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.416][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.417][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.424][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.425][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.430][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.507][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-07-12 16:01:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:52.519][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:52.522][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:52.525][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:01:52.526][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.538][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-07-12 16:01:52.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:52.540][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:52.545][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-07-12 16:01:52.546][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.547][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.567][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.568][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.575][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.576][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.606][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.685][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-07-12 16:01:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.706][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-07-12 16:01:52.707][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:52.708][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:52.713][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-07-12 16:01:52.714][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.715][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.716][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.751][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.759][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.766][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.767][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.778][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.800][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.852][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-07-12 16:01:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.873][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-07-12 16:01:52.874][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:52.875][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:52.878][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-07-12 16:01:52.879][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:52.880][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.881][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.893][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.901][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.902][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.920][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.939][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.013][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-07-12 16:01:53.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.047][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:53.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.091][private$selectFields]
biodb.TRACE[2025-07-12 16:01:53.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:53.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:53.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.103][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.108][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:01:53.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.138][private$selectFields]
biodb.TRACE[2025-07-12 16:01:53.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:53.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:53.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:53.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:01:53.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.185][private$selectFields]
biodb.TRACE[2025-07-12 16:01:53.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:53.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:53.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:53.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.218][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:01:53.219][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:53.220][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:53.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:53.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:53.235][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:53.237][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:01:53.238][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:53.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:53.249][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-07-12 16:01:53.250][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:53.252][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:53.255][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-07-12 16:01:53.256][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:53.257][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.270][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.313][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.328][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.391][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-07-12 16:01:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:53.413][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-07-12 16:01:53.414][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:53.415][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:53.418][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-07-12 16:01:53.419][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:53.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.421][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.440][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.441][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.448][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.458][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.474][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.694][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-07-12 16:01:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:53.715][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-07-12 16:01:53.716][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:53.717][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:53.720][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-07-12 16:01:53.721][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:53.722][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.723][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.778][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.795][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.863][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-07-12 16:01:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:53.887][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-07-12 16:01:53.888][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:53.890][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:53.893][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-07-12 16:01:53.894][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:53.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.912][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.919][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.923][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.952][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.024][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-07-12 16:01:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.045][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-07-12 16:01:54.046][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.048][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.051][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-07-12 16:01:54.052][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.053][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.054][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.065][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.080][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.107][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.184][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-07-12 16:01:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.205][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-07-12 16:01:54.206][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.207][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.210][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-07-12 16:01:54.211][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.213][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.267][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.289][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.341][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-07-12 16:01:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.363][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-07-12 16:01:54.363][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.365][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.368][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-07-12 16:01:54.369][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.370][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.371][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.383][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.390][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.408][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.501][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-07-12 16:01:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.522][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-07-12 16:01:54.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.524][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.527][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-07-12 16:01:54.528][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.529][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.530][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.542][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.574][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.580][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.584][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.587][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.591][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.592][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.599][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.600][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.606][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.614][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.657][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-07-12 16:01:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:54.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:54.672][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:54.674][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:01:54.675][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.709][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-07-12 16:01:54.710][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.712][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.716][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-07-12 16:01:54.717][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.719][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.731][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.760][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.771][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.793][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.801][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.802][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.844][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-07-12 16:01:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:54.865][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-07-12 16:01:54.866][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:54.868][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.871][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-07-12 16:01:54.872][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:54.874][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.886][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.887][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.901][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.927][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.936][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.942][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.954][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.955][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.004][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-07-12 16:01:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.016][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:55.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.034][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.050][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:01:55.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.080][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.081][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.091][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.093][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.096][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:01:55.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.126][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.137][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.141][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:01:55.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:55.155][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:01:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:55.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:55.270][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.272][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:01:55.273][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:55.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:55.278][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.280][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:01:55.281][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:55.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.343][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:55.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.362][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.363][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.378][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:01:55.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.443][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.450][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.451][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.463][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.467][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:01:55.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.497][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.513][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:01:55.525][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:55.526][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:55.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:55.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:55.541][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.544][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:01:55.545][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:55.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:55.577][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-07-12 16:01:55.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:55.579][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:55.582][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-07-12 16:01:55.583][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:55.584][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:55.585][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:55.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.604][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:55.605][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:55.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.612][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:55.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:55.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.627][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:55.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.638][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:55.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.661][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:55.662][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:55.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.668][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:55.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:55.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:55.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:55.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.716][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-07-12 16:01:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:55.736][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-07-12 16:01:55.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:55.738][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:55.742][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-07-12 16:01:55.742][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:55.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:55.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:55.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:55.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:55.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:55.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:55.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:55.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:55.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:55.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:55.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:55.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:55.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:55.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:55.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:55.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:55.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.869][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-07-12 16:01:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.881][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:55.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.900][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.912][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.916][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:01:55.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.946][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.947][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.962][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:01:55.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:55.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:55.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:55.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:55.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:55.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:55.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.995][private$selectFields]
biodb.TRACE[2025-07-12 16:01:55.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:55.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:55.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:55.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.007][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:01:56.024][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:56.024][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:56.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:56.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:56.039][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:56.043][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:01:56.044][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:56.055][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-07-12 16:01:56.056][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:56.057][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:56.061][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-07-12 16:01:56.062][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:56.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:56.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.091][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.120][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.128][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.135][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.193][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-07-12 16:01:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:56.218][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-07-12 16:01:56.219][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:56.220][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:56.225][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-07-12 16:01:56.226][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:56.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:56.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.291][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.308][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.324][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.325][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.374][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-07-12 16:01:56.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:56.399][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-07-12 16:01:56.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:56.402][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:56.406][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-07-12 16:01:56.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:56.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:56.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.432][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.433][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.440][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:56.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.469][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.485][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.488][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.493][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.501][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:56.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:56.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.557][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-07-12 16:01:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.569][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:56.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.587][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.599][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.603][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:01:56.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.633][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.635][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.643][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.644][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.649][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:01:56.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.679][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.690][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.695][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:01:56.707][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:56.708][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:01:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.719][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:01:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:56.729][biodb::testThat]
biodb.INFO [2025-07-12 16:01:56.730][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-07-12 16:01:56.731][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:56.732][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.741][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:56.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:56.807][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:56.808][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:01:56.809][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:56.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:56.834][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:56.836][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:01:56.837][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:56.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:56.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:56.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.897][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.897][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.908][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.913][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:01:56.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.943][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.959][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:01:56.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:56.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:56.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:56.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:56.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:56.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:56.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.989][private$selectFields]
biodb.TRACE[2025-07-12 16:01:56.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:56.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:56.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:56.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:56.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:56.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:56.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:01:57.018][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:57.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:57.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:57.035][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:57.037][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:57.039][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:01:57.040][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:57.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:57.083][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:57.086][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:01:57.087][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.148][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:57.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.167][private$selectFields]
biodb.TRACE[2025-07-12 16:01:57.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:57.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:57.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.178][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.183][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.195][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:01:57.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.213][private$selectFields]
biodb.TRACE[2025-07-12 16:01:57.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:57.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:57.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.225][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.229][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:01:57.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.259][private$selectFields]
biodb.TRACE[2025-07-12 16:01:57.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:57.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:57.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:01:57.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:57.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:57.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:57.305][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:57.308][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:57.309][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:01:57.310][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:57.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:57.374][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:57.380][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-07-12 16:01:57.381][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:57.414][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-07-12 16:01:57.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:57.417][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:57.421][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-07-12 16:01:57.422][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.423][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:57.424][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:57.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.436][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.443][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.451][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.484][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.503][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.559][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-07-12 16:01:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:57.580][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-07-12 16:01:57.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:57.582][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:57.587][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-07-12 16:01:57.588][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.589][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:57.590][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:57.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.609][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.610][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.616][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.646][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.661][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.669][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.720][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-07-12 16:01:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:57.741][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-07-12 16:01:57.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:57.743][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:57.747][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-07-12 16:01:57.748][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:57.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:57.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:57.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.762][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.770][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.771][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.777][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.778][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.787][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:57.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.803][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.804][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.811][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.825][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:57.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:57.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.883][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-07-12 16:01:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:57.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:57.894][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:57.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.913][private$selectFields]
biodb.TRACE[2025-07-12 16:01:57.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:57.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:57.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.925][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.929][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:01:57.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.959][private$selectFields]
biodb.TRACE[2025-07-12 16:01:57.960][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:57.961][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:57.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.971][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:57.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:57.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:57.987][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-07-12 16:01:57.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:57.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:57.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:57.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:57.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:57.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:57.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:57.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.006][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.006][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.009][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.010][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.017][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-07-12 16:01:58.035][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:58.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:01:58.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:58.101][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:58.104][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:58.105][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:01:58.106][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:58.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:58.111][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:58.113][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:01:58.114][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:58.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.193][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.205][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.209][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:01:58.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.239][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.251][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:01:58.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.285][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.297][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.305][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:01:58.318][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:58.319][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:58.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:58.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:58.333][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:58.338][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-07-12 16:01:58.339][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:58.389][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-07-12 16:01:58.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:58.391][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:58.396][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-07-12 16:01:58.397][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:58.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:58.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.441][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.455][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:58.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:58.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:58.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.470][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:58.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:58.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:58.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.477][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:58.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:58.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.485][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:58.486][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.528][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-07-12 16:01:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.540][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:58.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.563][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.574][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:01:58.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.608][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.620][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.624][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:01:58.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.654][private$selectFields]
biodb.TRACE[2025-07-12 16:01:58.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:58.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:58.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:58.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-07-12 16:01:58.682][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:01:58.683][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:01:58.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:01:58.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:58.698][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:01:58.701][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:01:58.702][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:58.774][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-07-12 16:01:58.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:58.776][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:58.780][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-07-12 16:01:58.781][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:58.783][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:58.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.795][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:58.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.848][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.854][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:58.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:58.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:58.862][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:58.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:58.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.869][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:58.870][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:58.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.912][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-07-12 16:01:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:58.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:58.933][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-07-12 16:01:58.934][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:58.935][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:58.940][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-07-12 16:01:58.941][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:58.942][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:58.943][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:58.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:58.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:58.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:58.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:58.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:58.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:58.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:58.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.963][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:58.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.970][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:58.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:58.996][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:58.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:58.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:58.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.004][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.011][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.012][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.019][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.078][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-07-12 16:01:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.099][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-07-12 16:01:59.100][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:59.101][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:59.106][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-07-12 16:01:59.107][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:59.109][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:59.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.131][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.135][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.136][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.161][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.164][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.187][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.237][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-07-12 16:01:59.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.258][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-07-12 16:01:59.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:59.261][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:59.265][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-07-12 16:01:59.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:59.268][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:59.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.287][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.288][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.309][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.347][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.397][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-07-12 16:01:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.418][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-07-12 16:01:59.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:59.420][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:59.424][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-07-12 16:01:59.425][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.427][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:59.428][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:59.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.439][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.446][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.454][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.469][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.480][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.503][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.554][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-07-12 16:01:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.575][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-07-12 16:01:59.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:59.577][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:59.581][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-07-12 16:01:59.582][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.583][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:59.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:59.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.608][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.615][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.641][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.713][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-07-12 16:01:59.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.734][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-07-12 16:01:59.735][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:01:59.737][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:59.740][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-07-12 16:01:59.741][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.742][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:59.743][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:59.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.755][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:59.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:59.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:59.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:59.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:59.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.797][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.827][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.828][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.875][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-07-12 16:01:59.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:59.887][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:01:59.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.905][private$selectFields]
biodb.TRACE[2025-07-12 16:01:59.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:59.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:59.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.921][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:01:59.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.951][private$selectFields]
biodb.TRACE[2025-07-12 16:01:59.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:59.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:01:59.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.962][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:01:59.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-07-12 16:01:59.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:59.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.996][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:01:59.997][private$selectFields]
biodb.TRACE[2025-07-12 16:01:59.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:01:59.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.008][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.009][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.010][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.011][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-07-12 16:02:00.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:00.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.039][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:00.049][biodb::testThat]
biodb.INFO [2025-07-12 16:02:00.050][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-07-12 16:02:00.050][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:00.051][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:00.054][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:00.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:00.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.129][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.131][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:00.132][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:00.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.156][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.158][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:00.159][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.200][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:00.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.218][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.222][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.229][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.234][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:00.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.264][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.280][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:00.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.310][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.320][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.322][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.326][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:00.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:00.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:00.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:00.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.355][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.357][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:00.357][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:00.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.406][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.409][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:00.410][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.471][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:00.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.489][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.500][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.505][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.517][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:00.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.535][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.547][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.551][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.563][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:00.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.581][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.582][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.583][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.593][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:00.610][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:00.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:00.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:00.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.630][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.632][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:00.633][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:00.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.795][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.797][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:00.798][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.861][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:00.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.884][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.894][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.895][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.900][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:00.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.929][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.940][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:00.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.975][private$selectFields]
biodb.TRACE[2025-07-12 16:02:00.975][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:00.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:00.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.986][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:00.987][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.988][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.990][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:01.003][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:01.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:01.078][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:01.080][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:01.082][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:01.082][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:01.085][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:01.087][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:01.090][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:01.090][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.157][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:01.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.175][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.186][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.202][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:01.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.220][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.222][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.231][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:01.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.266][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.267][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.277][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:01.295][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:01.295][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:01.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:01.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:01.310][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:01.313][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:01.314][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.381][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:01.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.400][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:01.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.445][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.461][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:01.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.491][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:01.520][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:01.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:01.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:01.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:01.536][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:01.539][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:01.540][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.603][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:01.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.622][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.638][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.642][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:01.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.672][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:01.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.717][private$selectFields]
biodb.TRACE[2025-07-12 16:02:01.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:01.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:01.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:01.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.733][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:01.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.745][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:01.746][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:01.747][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.782][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:01.783][biodb::testThat]
biodb.INFO [2025-07-12 16:02:01.784][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-07-12 16:02:01.785][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:01.786][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:01.788][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.792][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:01.855][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:01.858][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:01.864][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-12 16:02:01.865][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.879][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-07-12 16:02:01.880][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.881][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.885][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-07-12 16:02:01.886][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.904][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.912][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.919][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.948][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.949][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.970][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.978][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.021][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-07-12 16:02:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.042][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-07-12 16:02:02.043][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.045][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.049][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-07-12 16:02:02.050][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.051][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.063][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.064][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.108][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.123][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.131][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.132][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.139][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.186][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-07-12 16:02:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.207][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-07-12 16:02:02.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.209][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.214][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-07-12 16:02:02.215][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.216][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.217][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.228][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.229][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.236][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.291][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.292][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.342][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-07-12 16:02:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.363][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-07-12 16:02:02.364][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.366][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.369][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-07-12 16:02:02.370][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.371][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.372][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.391][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.426][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.429][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.444][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.501][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-07-12 16:02:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.513][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:02.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.532][private$selectFields]
biodb.TRACE[2025-07-12 16:02:02.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:02.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:02.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.548][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:02.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.578][private$selectFields]
biodb.TRACE[2025-07-12 16:02:02.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:02.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:02.580][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.589][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-12 16:02:02.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.624][private$selectFields]
biodb.TRACE[2025-07-12 16:02:02.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:02.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:02.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:02.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.637][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-12 16:02:02.658][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:02.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:02.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:02.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:02.673][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:02.678][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-12 16:02:02.679][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.691][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-07-12 16:02:02.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.693][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.697][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-07-12 16:02:02.698][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.699][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.700][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.718][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.751][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.766][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.773][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.774][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.825][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-07-12 16:02:02.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.846][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-07-12 16:02:02.847][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.848][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.853][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-07-12 16:02:02.854][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.855][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.883][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.891][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.909][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.929][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.987][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-07-12 16:02:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.008][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-07-12 16:02:03.009][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.010][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.013][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-07-12 16:02:03.014][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.015][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.016][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.028][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.043][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.070][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.092][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.143][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-07-12 16:02:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.168][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-07-12 16:02:03.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.171][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.175][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-07-12 16:02:03.176][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.177][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.178][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.230][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.245][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.252][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.253][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.303][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-07-12 16:02:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.324][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-07-12 16:02:03.325][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.326][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.330][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-07-12 16:02:03.331][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.333][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.334][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.360][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.378][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.390][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.405][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.415][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.468][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-07-12 16:02:03.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.488][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-07-12 16:02:03.489][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.491][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.495][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-07-12 16:02:03.496][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.498][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.517][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.550][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.580][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.581][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.623][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-07-12 16:02:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.644][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-07-12 16:02:03.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.646][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.651][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-07-12 16:02:03.652][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.674][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.711][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.715][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.722][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.723][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.737][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.787][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-07-12 16:02:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.799][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:03.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.818][private$selectFields]
biodb.TRACE[2025-07-12 16:02:03.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:03.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:03.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.822][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.834][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-12 16:02:03.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.864][private$selectFields]
biodb.TRACE[2025-07-12 16:02:03.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:03.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:03.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.874][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.875][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.880][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-12 16:02:03.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.910][private$selectFields]
biodb.TRACE[2025-07-12 16:02:03.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:03.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:03.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:03.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.930][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-12 16:02:03.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:03.944][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:03.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:03.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:03.958][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:03.960][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-12 16:02:03.961][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.972][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-07-12 16:02:03.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.974][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.977][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-07-12 16:02:03.978][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.979][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.980][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.992][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.999][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.000][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.033][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.034][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.036][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.047][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.062][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.065][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.106][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-07-12 16:02:04.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:04.127][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-07-12 16:02:04.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:04.129][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:04.132][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-07-12 16:02:04.133][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.134][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:04.136][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:04.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.147][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.154][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.193][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.208][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.219][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.223][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.265][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-07-12 16:02:04.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:04.278][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:04.280][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:04.282][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-12 16:02:04.283][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:04.295][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-07-12 16:02:04.295][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:04.297][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:04.300][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-07-12 16:02:04.301][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.302][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:04.304][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:04.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.315][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.323][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.339][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.356][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.360][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.375][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.453][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-07-12 16:02:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:04.474][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-07-12 16:02:04.475][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:04.476][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:04.480][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-07-12 16:02:04.481][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.482][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:04.483][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:04.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.494][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.502][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.509][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.510][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.532][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.539][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.554][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.561][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.569][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.570][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.613][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-07-12 16:02:04.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:04.635][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-07-12 16:02:04.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:04.637][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:04.641][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-07-12 16:02:04.642][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.643][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:04.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:04.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.656][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:04.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:04.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:04.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:04.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:04.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.697][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.699][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.726][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.734][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.735][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:04.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:04.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.777][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-07-12 16:02:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.789][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:04.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.808][private$selectFields]
biodb.TRACE[2025-07-12 16:02:04.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:04.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:04.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.820][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.821][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-12 16:02:04.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.854][private$selectFields]
biodb.TRACE[2025-07-12 16:02:04.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:04.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:04.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-12 16:02:04.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.901][private$selectFields]
biodb.TRACE[2025-07-12 16:02:04.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:04.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:04.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.911][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.912][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:04.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.917][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-12 16:02:04.930][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:04.931][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:04.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:04.957][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:04.960][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:04.966][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:04.967][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:04.989][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:04.991][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:04.993][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:04.994][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.035][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:05.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.054][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.065][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.070][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.082][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:05.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.100][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:05.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.146][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.148][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.161][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.174][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:05.175][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:05.176][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:05.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:05.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.191][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.193][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:05.194][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:05.241][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.243][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.246][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:05.247][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.308][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:05.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.327][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.338][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.340][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.343][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:05.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.373][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.384][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.389][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:05.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.419][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.431][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.435][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:05.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:05.449][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:05.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:05.462][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.464][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.466][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:05.471][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:05.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.634][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.636][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:05.637][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.699][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:05.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.723][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.735][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.739][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:05.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.769][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:05.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.815][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:05.845][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:05.846][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:05.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:05.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.876][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.885][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-12 16:02:05.886][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.937][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-07-12 16:02:05.938][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.939][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.944][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-07-12 16:02:05.945][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.946][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.947][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.966][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.974][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.010][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.032][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.040][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.040][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.083][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-07-12 16:02:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.124][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-07-12 16:02:06.125][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.126][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.130][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-07-12 16:02:06.131][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.160][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.183][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.187][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.209][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.266][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-07-12 16:02:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.287][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-07-12 16:02:06.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.289][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.291][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-07-12 16:02:06.292][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.293][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.314][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.321][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.333][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.336][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.337][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.362][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.373][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.414][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-07-12 16:02:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:06.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.445][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.461][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:06.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.492][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.499][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.513][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-12 16:02:06.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.543][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.555][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-12 16:02:06.572][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:06.573][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:06.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:06.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:06.587][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:06.593][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-12 16:02:06.594][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.658][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:06.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.677][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.688][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.693][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:06.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.723][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.727][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.728][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.735][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.739][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:06.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.775][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.786][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.790][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:06.804][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:06.804][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:06.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:06.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:06.819][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:06.823][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-12 16:02:06.824][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.856][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-07-12 16:02:06.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.858][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.861][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-07-12 16:02:06.862][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.863][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.884][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.891][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.892][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.914][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.917][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.926][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.948][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.949][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.992][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-07-12 16:02:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.018][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-07-12 16:02:07.019][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.020][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.024][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-07-12 16:02:07.025][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.027][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.046][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.054][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.076][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.079][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.080][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.095][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.102][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.105][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.154][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-07-12 16:02:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.175][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-07-12 16:02:07.176][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.178][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.182][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-07-12 16:02:07.183][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.184][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.185][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.205][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.212][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.236][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.239][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.317][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-07-12 16:02:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.358][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-07-12 16:02:07.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.360][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.365][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-07-12 16:02:07.366][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.368][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.387][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.424][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.434][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.449][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.498][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-07-12 16:02:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.523][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-07-12 16:02:07.524][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.526][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.530][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-07-12 16:02:07.531][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.532][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.533][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.551][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.573][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.574][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.582][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.588][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.610][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.613][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.661][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-07-12 16:02:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.682][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-07-12 16:02:07.683][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.684][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.688][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-07-12 16:02:07.689][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.690][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.691][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.703][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.710][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.717][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.720][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.743][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.766][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.779][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.821][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-07-12 16:02:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.842][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-07-12 16:02:07.843][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.844][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.848][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-07-12 16:02:07.849][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.851][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.878][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.904][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.927][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.928][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.978][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-07-12 16:02:07.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.999][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-07-12 16:02:08.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.001][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.005][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-07-12 16:02:08.006][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.008][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.009][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.033][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.040][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.063][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.063][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.065][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.066][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.081][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.089][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.090][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.140][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-07-12 16:02:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.161][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-07-12 16:02:08.162][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.163][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.167][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-07-12 16:02:08.168][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.169][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.170][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.189][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.197][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.223][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.246][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.247][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.302][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-07-12 16:02:08.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.322][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-07-12 16:02:08.323][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.325][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.328][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-07-12 16:02:08.329][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.331][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.332][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.350][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.353][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.366][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.372][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.373][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.384][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.406][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.458][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-07-12 16:02:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.479][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-07-12 16:02:08.480][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.481][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.484][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-07-12 16:02:08.485][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.486][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.487][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.506][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.507][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.546][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.550][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.561][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.569][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.576][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.577][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.620][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-07-12 16:02:08.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.761][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-07-12 16:02:08.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.763][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.767][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-07-12 16:02:08.768][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.769][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.794][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.802][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.824][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.828][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.832][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.843][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.851][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.901][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-07-12 16:02:08.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.942][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-07-12 16:02:08.943][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.945][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.948][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-07-12 16:02:08.949][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.005][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.083][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-07-12 16:02:09.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.103][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-07-12 16:02:09.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.106][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.109][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-07-12 16:02:09.110][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.165][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.239][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-07-12 16:02:09.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.260][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-07-12 16:02:09.261][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.262][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.265][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-07-12 16:02:09.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.268][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.269][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.308][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.323][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.326][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.348][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.349][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.398][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-07-12 16:02:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.419][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-07-12 16:02:09.420][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.422][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.425][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-07-12 16:02:09.426][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.427][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.428][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.440][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.447][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.451][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.459][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.462][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.463][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.481][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.484][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.503][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.504][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.559][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-07-12 16:02:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.580][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-07-12 16:02:09.581][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.582][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.586][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-07-12 16:02:09.587][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.589][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.615][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.641][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.714][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-07-12 16:02:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.736][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-07-12 16:02:09.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.738][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.741][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-07-12 16:02:09.742][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.743][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.802][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.806][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.809][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.879][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-07-12 16:02:09.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:09.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.929][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.930][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.945][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:09.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.976][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.978][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.986][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.992][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:10.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.023][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.039][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:10.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:10.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.087][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.093][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-12 16:02:10.094][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.195][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.206][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:10.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.241][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-12 16:02:10.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.287][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-12 16:02:10.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.322][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:10.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.336][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.341][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-12 16:02:10.342][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.482][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.500][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.501][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.516][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-12 16:02:10.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.551][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.563][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-12 16:02:10.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.597][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.612][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.624][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-12 16:02:10.625][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.626][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:10.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.640][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.642][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-12 16:02:10.643][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:10.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.688][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.690][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-12 16:02:10.691][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.753][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.771][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-12 16:02:10.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.822][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.823][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.834][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.837][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.838][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-12 16:02:10.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.867][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-12 16:02:10.896][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.897][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:10.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.925][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.927][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:10.928][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:10.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.953][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.954][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:10.955][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.015][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.031][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:11.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.066][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.067][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.077][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:11.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.111][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.112][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.121][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:11.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:11.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:11.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:11.153][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.156][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.157][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:11.158][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:11.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.204][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.207][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:11.208][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.270][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:11.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.294][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.295][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.296][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.306][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.311][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:11.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.341][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.353][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.354][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.356][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:11.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.388][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.395][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.396][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.399][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.403][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.404][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:11.417][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:11.418][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:11.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:11.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.432][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.434][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:11.435][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:11.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.603][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.605][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:11.606][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.667][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:11.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.686][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.697][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.702][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:11.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.732][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.743][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.748][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:11.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.778][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.794][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.799][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:11.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:11.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:11.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:11.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.841][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.844][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-12 16:02:11.845][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.966][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:11.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.984][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.985][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.986][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.988][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.995][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.996][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.000][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:12.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.031][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.048][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.052][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-12 16:02:12.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.082][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.089][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.090][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.093][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.098][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-12 16:02:12.110][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:12.111][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:12.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:12.123][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.126][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.131][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-12 16:02:12.132][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:12.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.215][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.226][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.231][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:12.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.261][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.272][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.277][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:12.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.313][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.314][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:12.341][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:12.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:12.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:12.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.357][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.361][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-12 16:02:12.362][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.928][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:12.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.947][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.963][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.975][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:12.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.994][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.000][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:13.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.046][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.049][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.050][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.053][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.054][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.057][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.062][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:13.075][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:13.075][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:13.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.149][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.155][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:13.157][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:13.270][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-07-12 16:02:13.271][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:13.272][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:13.277][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-07-12 16:02:13.283][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:13.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:13.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.306][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.335][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.342][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.372][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.416][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-07-12 16:02:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:13.437][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-07-12 16:02:13.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:13.439][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:13.444][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-07-12 16:02:13.445][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:13.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:13.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.484][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.504][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.527][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.541][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.583][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-07-12 16:02:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:13.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.614][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.615][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.616][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.617][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.626][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.630][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:13.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.661][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.673][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.677][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:13.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.708][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-12 16:02:13.737][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:13.737][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:13.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:13.750][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.752][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.759][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-12 16:02:13.761][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:13.775][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-07-12 16:02:13.776][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:13.778][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:13.782][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-07-12 16:02:13.783][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:13.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:13.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.810][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.811][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.825][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.826][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:13.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:13.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.870][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.880][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.921][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-07-12 16:02:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:13.962][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-07-12 16:02:13.963][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:13.964][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:13.968][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-07-12 16:02:13.969][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.970][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:13.971][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:13.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.983][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.986][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:13.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.990][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.991][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.993][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.998][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:13.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.028][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.049][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.064][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.064][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.107][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-07-12 16:02:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.138][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:14.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.157][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.158][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.169][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.173][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-12 16:02:14.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.203][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:14.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.250][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.251][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.261][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.266][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.278][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:14.279][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:14.280][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:14.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:14.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:14.300][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:14.303][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-12 16:02:14.304][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.315][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-07-12 16:02:14.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.318][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.322][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-07-12 16:02:14.323][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.324][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.325][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.336][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.344][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.345][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.377][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.387][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.392][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.393][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.400][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.401][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.451][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-07-12 16:02:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.472][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-07-12 16:02:14.473][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.475][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.477][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-07-12 16:02:14.478][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.500][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.530][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.531][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.534][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.613][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-07-12 16:02:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.635][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-07-12 16:02:14.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.637][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.640][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-07-12 16:02:14.641][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.642][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.663][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.664][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.697][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.700][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.704][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.705][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.711][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.712][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.727][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.770][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-07-12 16:02:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.798][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-07-12 16:02:14.799][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.800][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.804][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-07-12 16:02:14.805][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.807][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.808][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.819][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.827][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.837][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.864][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.879][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.886][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.887][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.895][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.938][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-07-12 16:02:14.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:14.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.989][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-12 16:02:15.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.054][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.056][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.066][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.071][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-12 16:02:15.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.101][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.117][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.129][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-12 16:02:15.130][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:15.130][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:15.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:15.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.159][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.161][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:15.162][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:15.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.167][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.169][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:15.170][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.232][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:15.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.251][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.253][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.263][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.267][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:15.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.303][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.315][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.319][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:15.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.349][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:15.377][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:15.378][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:15.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:15.391][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.393][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.396][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:15.396][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.458][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:15.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.477][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.488][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.493][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:15.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.523][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:15.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.574][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.590][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:15.603][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:15.604][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:15.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:15.616][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.618][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.622][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:15.623][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.685][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:15.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.703][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.704][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.720][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:15.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.750][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.762][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.766][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:15.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.802][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.814][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:15.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:15.832][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:15.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:15.858][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.860][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.865][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-12 16:02:15.866][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.917][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-07-12 16:02:15.918][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.920][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.924][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-07-12 16:02:15.925][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.926][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.947][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.954][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.977][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.978][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.984][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.999][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.000][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.015][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.065][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-07-12 16:02:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.086][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-07-12 16:02:16.087][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.088][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.092][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-07-12 16:02:16.093][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.094][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.095][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.107][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.114][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.115][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.118][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.122][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.151][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.155][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.167][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.168][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.226][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-07-12 16:02:16.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.247][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-07-12 16:02:16.248][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.250][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.255][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-07-12 16:02:16.256][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.257][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.270][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.313][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.321][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.344][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.395][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-07-12 16:02:16.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.416][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-07-12 16:02:16.417][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.418][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.423][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-07-12 16:02:16.424][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.446][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.447][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.453][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.454][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.479][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.483][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.490][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.498][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.506][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.513][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.562][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-07-12 16:02:16.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.583][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-07-12 16:02:16.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.585][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.590][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-07-12 16:02:16.590][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.604][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.611][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.645][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.719][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-07-12 16:02:16.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.751][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:16.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.769][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.776][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:16.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.821][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.824][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.832][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.833][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.837][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:16.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.867][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.870][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.878][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:16.896][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:16.896][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:16.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:16.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:16.911][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:16.918][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-12 16:02:16.919][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.975][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-07-12 16:02:16.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.977][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.981][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-07-12 16:02:16.982][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.995][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.003][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.004][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.025][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.026][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.033][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.034][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.037][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.051][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.116][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-07-12 16:02:17.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.137][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-07-12 16:02:17.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.139][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.143][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-07-12 16:02:17.144][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.145][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.199][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.222][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.230][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.273][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-07-12 16:02:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.294][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-07-12 16:02:17.295][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.297][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.301][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-07-12 16:02:17.302][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.303][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.304][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.329][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.330][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.363][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.370][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.373][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.381][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.436][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-07-12 16:02:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.458][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-07-12 16:02:17.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.460][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.464][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-07-12 16:02:17.465][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.467][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.468][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.495][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.496][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.531][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.544][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.551][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.602][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-07-12 16:02:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.622][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-07-12 16:02:17.623][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.625][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.629][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-07-12 16:02:17.630][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.631][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.643][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.646][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.651][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.658][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.684][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.699][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.758][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-07-12 16:02:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.779][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-07-12 16:02:17.780][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.782][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.785][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-07-12 16:02:17.786][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.789][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.808][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.843][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.847][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.848][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.920][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-07-12 16:02:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.941][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-07-12 16:02:17.942][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.943][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.947][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-07-12 16:02:17.948][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.003][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.011][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.018][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.026][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.083][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-07-12 16:02:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.103][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-07-12 16:02:18.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.106][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.110][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-07-12 16:02:18.111][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.131][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.132][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.165][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.187][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.195][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.239][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-07-12 16:02:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.260][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-07-12 16:02:18.260][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.262][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.265][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-07-12 16:02:18.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.268][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.287][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.288][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.310][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.311][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.314][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.350][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.351][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.393][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-07-12 16:02:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.414][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-07-12 16:02:18.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.416][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.420][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-07-12 16:02:18.421][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.422][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.423][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.435][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.437][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.442][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.450][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.468][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.491][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.542][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-07-12 16:02:18.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.569][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-07-12 16:02:18.570][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.571][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.575][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-07-12 16:02:18.576][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.578][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.579][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.598][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.605][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.627][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.628][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.631][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.646][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.661][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.705][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-07-12 16:02:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.726][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-07-12 16:02:18.727][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.728][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.733][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-07-12 16:02:18.734][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.735][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.755][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.756][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.763][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.778][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.779][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.804][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.812][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.813][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.869][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-07-12 16:02:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.890][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-07-12 16:02:18.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.892][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.896][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-07-12 16:02:18.897][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.918][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.919][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.926][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.952][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.983][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.025][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-07-12 16:02:19.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.046][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-07-12 16:02:19.047][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.049][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.053][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-07-12 16:02:19.054][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.056][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.057][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.082][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.097][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.111][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.112][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.115][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.188][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-07-12 16:02:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.210][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-07-12 16:02:19.211][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.212][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.216][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-07-12 16:02:19.217][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.246][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.273][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.273][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.287][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.295][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.352][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-07-12 16:02:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.373][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-07-12 16:02:19.374][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.375][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.379][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-07-12 16:02:19.380][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.381][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.382][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.394][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.401][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.434][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.435][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.458][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.459][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.509][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-07-12 16:02:19.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.530][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-07-12 16:02:19.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.532][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.536][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-07-12 16:02:19.537][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.539][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.559][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.560][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.572][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.590][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.595][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.596][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.598][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.602][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.628][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.629][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.672][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-07-12 16:02:19.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.693][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-07-12 16:02:19.694][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.695][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.700][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-07-12 16:02:19.701][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.702][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.703][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.714][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.722][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.723][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.730][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.752][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.836][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-07-12 16:02:19.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.857][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-07-12 16:02:19.858][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.859][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.865][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-07-12 16:02:19.866][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.867][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.868][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.920][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.928][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.929][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.995][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-07-12 16:02:19.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.016][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-07-12 16:02:20.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.018][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.022][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-07-12 16:02:20.023][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.085][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.157][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-07-12 16:02:20.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.179][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-07-12 16:02:20.180][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.181][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.184][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-07-12 16:02:20.185][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.186][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.187][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.215][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.223][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.241][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.264][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.265][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.326][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-07-12 16:02:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.348][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-07-12 16:02:20.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.350][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.354][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-07-12 16:02:20.355][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.368][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.376][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.394][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.410][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.418][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.418][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.425][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.484][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-07-12 16:02:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.505][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-07-12 16:02:20.506][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.508][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.511][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-07-12 16:02:20.512][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.513][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.514][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.646][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-07-12 16:02:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.667][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-07-12 16:02:20.668][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.670][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.674][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-07-12 16:02:20.675][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.676][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.696][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.704][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.711][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.712][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.730][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.737][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.738][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.752][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.753][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.804][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-07-12 16:02:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.831][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-07-12 16:02:20.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.833][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.837][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-07-12 16:02:20.838][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.839][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.852][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.866][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.874][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.875][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.881][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.889][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.896][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.900][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.911][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.918][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.970][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-07-12 16:02:20.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.991][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-07-12 16:02:20.992][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.993][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.997][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-07-12 16:02:20.998][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.012][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.020][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.054][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.083][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.134][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-07-12 16:02:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.185][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:21.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.204][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.220][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:21.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.251][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.262][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.264][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.267][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.279][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:21.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.297][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.309][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.313][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:21.332][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:21.333][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:21.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:21.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:21.348][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:21.354][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:21.355][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.439][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:21.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.457][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.469][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:21.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.504][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:21.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.550][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:21.587][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:21.587][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:21.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:21.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:21.617][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:21.623][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:21.624][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:21.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.786][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.801][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:21.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.839][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.850][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:21.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.885][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.896][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.900][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-12 16:02:21.913][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:21.914][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:21.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:21.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:21.929][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:21.935][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-12 16:02:21.937][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.021][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.040][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.051][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.052][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.056][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.075][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-12 16:02:22.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.093][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.100][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.109][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:22.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.139][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.140][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:22.168][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.169][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.184][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.186][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-12 16:02:22.187][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.290][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.315][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.316][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.327][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.332][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-12 16:02:22.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.362][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-12 16:02:22.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.407][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.408][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.424][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-12 16:02:22.437][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.438][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.467][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.469][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:22.470][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:22.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.475][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.477][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:22.478][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.541][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.566][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.578][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:22.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.612][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:22.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.659][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.671][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:22.688][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.702][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.705][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.707][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:22.708][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.772][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.790][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.808][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.813][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:22.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.843][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.844][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.854][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.859][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.870][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:22.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.888][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.892][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.893][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.900][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:22.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.933][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.937][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:22.938][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.000][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:23.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.018][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:23.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.071][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:23.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.116][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.131][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:23.145][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:23.146][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:23.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:23.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.175][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.180][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-12 16:02:23.181][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:23.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.370][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.382][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.386][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:23.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.417][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.429][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.445][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:23.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.464][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.475][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.480][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:23.493][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:23.494][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:23.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:23.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.508][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.515][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-12 16:02:23.516][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:23.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.142][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:24.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.160][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.176][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:24.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.207][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.218][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.223][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:24.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.253][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:24.288][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:24.289][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:24.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:24.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:24.304][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:24.310][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:24.311][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:24.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.395][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:24.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.414][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.430][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.431][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.443][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:24.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.461][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.473][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.477][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:24.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.514][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.515][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.516][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.527][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.531][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:24.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:24.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:24.574][biodb::testThat]
biodb.INFO [2025-07-12 16:02:24.574][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-07-12 16:02:24.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:24.576][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.582][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:24.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:24.646][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:24.648][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:24.650][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:24.651][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:24.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:24.674][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:24.676][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:24.678][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:24.679][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:24.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.721][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:24.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.739][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.782][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:24.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:24.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:24.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:24.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:24.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:24.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.825][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:24.825][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.826][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.827][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.828][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:24.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.833][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:24.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:24.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.854][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.855][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.861][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.862][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.865][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:24.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:24.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:24.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:24.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.883][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:24.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:24.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.893][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.894][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:24.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.897][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.904][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.908][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:24.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:24.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:24.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.915][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:24.916][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:24.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.920][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:24.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:24.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.942][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.944][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.945][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:24.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:24.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:24.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.952][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:24.953][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:24.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.956][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:24.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:24.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:24.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-12 16:02:25.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.188][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.188][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.190][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.191][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.192][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.196][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.224][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.228][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.242][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.260][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.278][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.285][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.286][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.308][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.318][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.322][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.326][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.329][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:25.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.720][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.721][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.722][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.723][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.724][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:25.725][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.726][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.728][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.729][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.743][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.747][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.749][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.753][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.756][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.760][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.766][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.767][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.771][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.781][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.799][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.803][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.809][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.810][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:25.811][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:25.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.833][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.841][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.842][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.848][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.851][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:25.980][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:25.981][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:25.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:25.994][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:25.996][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:25.998][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:25.999][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:26.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:26.043][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:26.046][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:26.047][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.109][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:26.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.168][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.207][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.208][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.210][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.211][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.222][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.233][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.243][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.246][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.257][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.258][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.264][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.285][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.286][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.289][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.296][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.297][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.301][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.302][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.308][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.320][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.322][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.323][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.329][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.330][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.340][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.363][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:26.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.536][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.557][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.575][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.576][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.578][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.583][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.584][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.590][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.593][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.598][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.607][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.614][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.628][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.635][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.656][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.657][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.667][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.668][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.668][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.672][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.673][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.675][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.679][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.686][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.693][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.694][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.700][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.710][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:26.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.945][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.946][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.947][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.949][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:26.949][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.963][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.974][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.981][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.985][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.992][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.999][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.000][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.014][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.024][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.025][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.027][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.034][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:27.035][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:27.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.040][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.040][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.057][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.064][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.065][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.068][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.075][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.203][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:27.204][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:27.205][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:27.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:27.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:27.220][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:27.222][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:27.223][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:27.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:27.389][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:27.391][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:27.391][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.451][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:27.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.547][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.548][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.551][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.555][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.556][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.573][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.576][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.587][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.590][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.609][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.623][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.630][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.633][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.638][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.640][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.641][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.642][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.652][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.673][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.684][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-12 16:02:27.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.918][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.919][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.921][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:27.922][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.923][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.925][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.926][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.954][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.957][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.963][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.964][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.965][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.968][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.969][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.975][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.989][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.993][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.996][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.007][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.008][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.012][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.018][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.030][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.037][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.040][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.047][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.063][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-12 16:02:28.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.271][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:28.272][private$selectFields]
biodb.TRACE[2025-07-12 16:02:28.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:28.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:28.275][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:28.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.279][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.286][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.308][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.312][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.315][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.321][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.325][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.332][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.333][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.341][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.346][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.353][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.355][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.359][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.363][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.364][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.365][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.368][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.369][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.375][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.378][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.386][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.393][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.401][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.403][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:28.530][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:28.531][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:28.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:28.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:28.555][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:28.556][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:28.557][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:28.579][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:28.582][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:28.583][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:28.584][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.626][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:28.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.729][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:28.729][private$selectFields]
biodb.TRACE[2025-07-12 16:02:28.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:28.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:28.732][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:28.733][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.748][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.757][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.775][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.776][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.779][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.789][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.804][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.805][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.814][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.818][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.825][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.826][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:28.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.828][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.829][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:28.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.833][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.858][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.868][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-12 16:02:28.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.099][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.100][private$selectFields]
biodb.TRACE[2025-07-12 16:02:29.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:29.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:29.103][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.103][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.104][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.114][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.128][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.131][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.135][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.145][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.146][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.153][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.160][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.177][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.192][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.193][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.195][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.196][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.201][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.202][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.208][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.229][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.232][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.240][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:29.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.483][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.484][private$selectFields]
biodb.TRACE[2025-07-12 16:02:29.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:29.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:29.487][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.488][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.489][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.511][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.512][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.519][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.520][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.534][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.535][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.541][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.561][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.568][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.572][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.579][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.580][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.582][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:29.583][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:29.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.587][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.588][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.589][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.590][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.595][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.605][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.612][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.616][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.619][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.623][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:29.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:29.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:29.750][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:29.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:29.763][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:29.766][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:29.771][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:29.772][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:29.814][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:29.816][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:29.819][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:29.820][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.881][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:29.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.978][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.981][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.985][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.986][private$selectFields]
biodb.TRACE[2025-07-12 16:02:29.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:29.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:29.988][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:29.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.992][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.993][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.018][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.025][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.029][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.036][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.037][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.081][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.082][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.085][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.086][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.097][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.102][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.118][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.119][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.121][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.128][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.129][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:30.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.371][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.371][private$selectFields]
biodb.TRACE[2025-07-12 16:02:30.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:30.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:30.374][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.378][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.378][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.379][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.385][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.396][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.397][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.407][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.408][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.417][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.418][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.421][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.424][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.432][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.434][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.453][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.454][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.456][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.461][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.464][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.464][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.467][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.468][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.505][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.506][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.511][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.515][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:30.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.761][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.761][private$selectFields]
biodb.TRACE[2025-07-12 16:02:30.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:30.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:30.764][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:30.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.768][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.789][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.796][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.797][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.800][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.807][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.808][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.809][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.810][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.813][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.814][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.815][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.821][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.822][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.831][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.832][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.837][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.842][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.852][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.853][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:30.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.856][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:30.857][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:30.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.868][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.886][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.887][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.889][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.896][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.912][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:31.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:31.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:31.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:31.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:31.043][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:31.045][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:31.046][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:31.208][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:31.210][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:31.212][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:31.213][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.278][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:31.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.381][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.382][private$selectFields]
biodb.TRACE[2025-07-12 16:02:31.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:31.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:31.384][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.385][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.409][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.413][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.417][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.418][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.424][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.425][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.427][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.428][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.429][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.430][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.434][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.446][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.447][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.450][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.456][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.461][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.463][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.464][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.467][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.474][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.475][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.481][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.482][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.483][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.515][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.518][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.525][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-12 16:02:31.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.768][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.769][private$selectFields]
biodb.TRACE[2025-07-12 16:02:31.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:31.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:31.772][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:31.773][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.797][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.798][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.804][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.815][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.816][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.818][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.822][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.840][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.843][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.850][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.851][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.853][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.857][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.861][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.862][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:31.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.864][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:31.865][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:31.866][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.887][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.894][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.905][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-12 16:02:32.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.137][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.138][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.141][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.145][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.146][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.151][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.152][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.163][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.164][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.184][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.185][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.191][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.198][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.223][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.224][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.234][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.235][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:32.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.237][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:32.238][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:32.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.243][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.267][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.278][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.403][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:32.404][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:32.404][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:32.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.472][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.474][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:32.475][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:32.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.480][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.482][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:32.483][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:32.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.544][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:32.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.641][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.642][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.644][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.670][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.677][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.681][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.691][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.695][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.696][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.715][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.720][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.724][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.730][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.735][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.735][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:32.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.740][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.747][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.748][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.751][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.757][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.758][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.768][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.769][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.776][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.778][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:32.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:32.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:32.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:32.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:32.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:32.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:32.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:32.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.014][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.015][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.017][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.022][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.029][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.037][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.040][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.043][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.050][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.051][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.058][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.071][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.079][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.092][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.095][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.103][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.103][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.104][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.105][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.108][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.109][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.121][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.126][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.127][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.128][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.129][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.136][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.136][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.140][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.147][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.166][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:33.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.340][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.382][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.383][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.386][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.390][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.411][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.419][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.437][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.438][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.444][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.464][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.468][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.472][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.475][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:33.476][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:33.477][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.480][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.498][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.511][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.511][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.512][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.515][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:33.640][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:33.641][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.657][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.659][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:33.660][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:33.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.725][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:33.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.820][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.821][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.824][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.824][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.828][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.835][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.843][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.846][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.847][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.849][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.856][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.860][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.880][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.889][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.891][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.898][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.910][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.913][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.914][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:33.915][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.918][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.919][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.925][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:33.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.936][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.939][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:33.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.943][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.946][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.947][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:33.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.949][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:33.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:33.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.953][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:33.954][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:33.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.956][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:34.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.192][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.193][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.195][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.196][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.197][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.199][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.218][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.227][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.235][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.238][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.241][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.265][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.269][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.273][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.276][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.280][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:34.281][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:34.282][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.285][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.286][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.303][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.320][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.320][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:34.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.544][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.545][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.548][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.552][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.562][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.584][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.590][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.591][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.594][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.615][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.622][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.637][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:34.638][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:34.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.666][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.677][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:34.802][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:34.803][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:34.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:34.816][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:34.818][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:34.822][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:34.823][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:34.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.888][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:34.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.923][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:34.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:34.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:34.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:34.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.983][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.984][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.985][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.986][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.986][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:34.987][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:34.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:34.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.991][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:34.992][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:34.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.993][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.995][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.998][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:34.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.000][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.005][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.006][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.018][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.019][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.033][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.034][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.039][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.040][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.051][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.054][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.058][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.059][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.061][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.065][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.068][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.069][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.072][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.073][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.074][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.077][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.078][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.088][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.089][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.096][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.105][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.120][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.224][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-12 16:02:35.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.355][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.356][private$selectFields]
biodb.TRACE[2025-07-12 16:02:35.357][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:35.357][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:35.358][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.359][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.363][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.364][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.369][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.372][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.374][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.384][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.387][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.390][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.390][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.394][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.401][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.404][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.411][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.412][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.425][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.432][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.433][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.440][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.443][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.444][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.444][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.448][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.449][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.458][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.463][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.472][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.483][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-12 16:02:35.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.707][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.708][private$selectFields]
biodb.TRACE[2025-07-12 16:02:35.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:35.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:35.710][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.715][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.716][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.717][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.718][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.719][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.722][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.733][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.736][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.739][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.743][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.746][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.750][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.751][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.757][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.763][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.771][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.772][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.781][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.785][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.789][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.792][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.793][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.796][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.797][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.798][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.801][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.819][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.823][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.843][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.850][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:35.974][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:35.975][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:35.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:35.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:35.995][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:35.997][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:35.998][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:36.000][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:36.003][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:36.005][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:36.006][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:36.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:36.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.175][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.176][private$selectFields]
biodb.TRACE[2025-07-12 16:02:36.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:36.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:36.179][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.183][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.208][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.211][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.222][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.223][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.250][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.257][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.261][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.262][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.268][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.269][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.271][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.272][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.284][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.305][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.316][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:36.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.509][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.559][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.560][private$selectFields]
biodb.TRACE[2025-07-12 16:02:36.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:36.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:36.567][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.571][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.572][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.578][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.584][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.592][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.596][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.599][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.600][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.603][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.606][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.607][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.610][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.611][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.645][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.646][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.648][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.655][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.656][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.658][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.659][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.660][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.664][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.665][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.671][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.685][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.692][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.703][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:36.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:36.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.947][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.948][private$selectFields]
biodb.TRACE[2025-07-12 16:02:36.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:36.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:36.951][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.952][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.954][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.960][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.974][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.977][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.984][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.986][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.987][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.995][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.995][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.002][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.009][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.030][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.041][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.042][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.045][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.045][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.046][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.058][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.059][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.061][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.066][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.072][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.079][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.082][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.082][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.086][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.087][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.090][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:37.218][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:37.218][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:37.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:37.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:37.234][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:37.237][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:37.238][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:37.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:37.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.408][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.409][private$selectFields]
biodb.TRACE[2025-07-12 16:02:37.410][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:37.411][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:37.412][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.415][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.416][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.422][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.423][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.430][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.431][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.433][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.434][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.444][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.448][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.452][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.455][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.456][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.458][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.490][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.491][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.494][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.501][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.502][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.505][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.506][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.506][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.510][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.517][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.542][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.543][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.553][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:37.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.797][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.798][private$selectFields]
biodb.TRACE[2025-07-12 16:02:37.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:37.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:37.801][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.802][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.805][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.823][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.827][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.833][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.837][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.844][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.845][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.851][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.858][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.862][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.879][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.889][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.890][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:37.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.893][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.894][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.895][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.898][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.905][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.909][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.910][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.916][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.923][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.934][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:38.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.185][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.186][private$selectFields]
biodb.TRACE[2025-07-12 16:02:38.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:38.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:38.189][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.194][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.215][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.216][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.227][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.239][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.240][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.271][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.272][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.279][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.283][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.287][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.288][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.291][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.292][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.308][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.309][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.314][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.322][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.333][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.340][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.344][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.352][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:38.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:38.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:38.482][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:38.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:38.496][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:38.498][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-07-12 16:02:38.502][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:38.503][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:38.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:38.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:38.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:38.570][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:38.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.672][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.673][private$selectFields]
biodb.TRACE[2025-07-12 16:02:38.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:38.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:38.675][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.687][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.691][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.697][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.701][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.706][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.708][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.711][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.719][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.720][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.744][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.745][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.747][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.748][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.750][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.754][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.755][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.757][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.762][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.765][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.766][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.769][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.770][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.773][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.774][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.775][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.789][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.803][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.808][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.808][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.815][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.816][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.818][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-12 16:02:38.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.009][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.063][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.064][private$selectFields]
biodb.TRACE[2025-07-12 16:02:39.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:39.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:39.067][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.068][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.084][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.089][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.090][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.099][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.103][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.105][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.106][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.107][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.110][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.111][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.117][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.118][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.124][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.125][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.127][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.137][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.138][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.139][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.145][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.146][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.151][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.155][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.156][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.159][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.160][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.164][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.165][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.171][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.189][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.193][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.200][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-12 16:02:39.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.433][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.433][private$selectFields]
biodb.TRACE[2025-07-12 16:02:39.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:39.435][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:39.436][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.437][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.441][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.442][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.443][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.448][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.456][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.458][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.458][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.459][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.462][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.469][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.480][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.481][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.509][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.511][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.516][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.531][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.532][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.535][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.536][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.540][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.541][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.547][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.558][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.561][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.565][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.568][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.575][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:39.703][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:39.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:39.723][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-07-12 16:02:39.724][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-07-12 16:02:39.725][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-07-12 16:02:39.725][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.727][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.729][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
> 
> proc.time()
   user  system elapsed 
 57.873   1.091  62.756

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)