Back to Long Tests report for BioC 3.22

This page was generated on 2025-09-13 23:55 -0400 (Sat, 13 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4719
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4538
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-13 09:55 -0400 (Sat, 13 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-09-13 16:01:09 -0400 (Sat, 13 Sep 2025)
EndedAt: 2025-09-13 16:02:36 -0400 (Sat, 13 Sep 2025)
EllapsedTime: 87.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-13 16:01:40.882][biodb::testContext]
biodb.INFO [2025-09-13 16:01:40.884][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-13 16:01:40.885][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-09-13 16:01:40.886][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-13 16:01:40.887][biodb::testContext]
biodb.INFO [2025-09-13 16:01:40.894][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-13 16:01:40.896][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-13 16:01:40.903][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:40.904][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-13 16:01:40.905][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.909][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-13 16:01:40.930][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.934][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-13 16:01:40.935][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.939][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-13 16:01:40.940][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-13 16:01:40.941][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-13 16:01:40.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.945][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-13 16:01:40.946][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-13 16:01:40.947][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.951][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-13 16:01:40.952][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-13 16:01:40.953][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.964][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-13 16:01:40.965][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-13 16:01:40.966][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-13 16:01:40.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.969][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-13 16:01:40.970][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.973][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-13 16:01:40.974][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-13 16:01:40.975][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-13 16:01:40.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.979][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-13 16:01:40.979][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-13 16:01:40.980][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-13 16:01:40.981][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-13 16:01:40.982][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-13 16:01:40.983][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-13 16:01:40.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.986][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-13 16:01:40.987][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-13 16:01:40.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.991][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-13 16:01:40.992][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-13 16:01:40.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.995][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-13 16:01:40.996][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-13 16:01:40.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:40.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:40.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:40.999][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-13 16:01:41.000][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-13 16:01:41.001][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-13 16:01:41.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.004][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-13 16:01:41.005][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-13 16:01:41.009][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-13 16:01:41.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.013][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-13 16:01:41.014][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-13 16:01:41.015][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-13 16:01:41.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.020][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-13 16:01:41.051][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.065][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-13 16:01:41.066][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.067][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:41.068][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.069][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.070][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.071][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.072][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-13 16:01:41.073][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:41.074][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.075][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-13 16:01:41.075][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:41.076][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.077][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.078][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:41.078][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:41.078][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:41.078][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-13 16:01:41.078][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-13 16:01:41.079][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:41.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:41.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.084][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.085][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.086][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:41.087][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:41.088][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.089][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.090][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-13 16:01:41.092][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.092][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-13 16:01:41.093][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.094][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:41.095][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.096][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.097][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.098][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.099][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-13 16:01:41.100][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:41.101][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.102][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-13 16:01:41.103][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:41.103][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.105][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:41.105][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:41.105][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:41.105][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-13 16:01:41.105][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-13 16:01:41.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:41.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.108][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.109][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:41.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.110][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.111][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.112][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.113][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:41.114][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:41.115][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.116][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.117][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-13 16:01:41.118][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.119][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-13 16:01:41.120][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.121][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:41.122][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.123][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.124][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.125][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.126][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-13 16:01:41.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:41.128][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.129][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-13 16:01:41.129][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:41.130][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.131][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.132][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.133][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:41.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.136][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:41.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.138][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.139][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.140][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:41.141][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:41.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.143][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.144][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-13 16:01:41.145][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.146][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-13 16:01:41.147][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.148][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:41.149][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.150][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.151][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.152][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.153][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-13 16:01:41.154][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:41.154][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.155][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-13 16:01:41.156][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:41.157][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.158][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.164][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.165][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:41.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.167][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:41.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.170][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.171][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:41.172][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:41.173][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.174][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:41.177][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:41.178][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.245][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-13 16:01:41.250][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-13 16:01:41.251][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-13 16:01:41.252][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-13 16:01:41.254][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-13 16:01:41.255][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-13 16:01:41.256][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-13 16:01:41.257][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-13 16:01:41.259][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-13 16:01:41.260][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-13 16:01:41.261][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-13 16:01:41.262][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-13 16:01:41.264][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-13 16:01:41.265][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-13 16:01:41.266][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-13 16:01:41.268][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-13 16:01:41.269][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-13 16:01:41.270][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-13 16:01:41.271][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-13 16:01:41.273][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-13 16:01:41.274][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-13 16:01:41.275][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-13 16:01:41.277][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-13 16:01:41.278][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-13 16:01:41.279][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-13 16:01:41.280][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-13 16:01:41.282][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-13 16:01:41.283][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-13 16:01:41.284][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-13 16:01:41.286][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-13 16:01:41.287][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-13 16:01:41.288][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-13 16:01:41.289][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-13 16:01:41.291][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-13 16:01:41.292][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-13 16:01:41.293][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-13 16:01:41.294][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-13 16:01:41.296][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-13 16:01:41.297][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-13 16:01:41.298][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-13 16:01:41.300][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-13 16:01:41.301][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-13 16:01:41.302][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-13 16:01:41.303][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-13 16:01:41.305][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-13 16:01:41.306][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-13 16:01:41.307][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-13 16:01:41.309][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-13 16:01:41.310][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-13 16:01:41.311][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-13 16:01:41.312][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-13 16:01:41.314][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-13 16:01:41.315][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-13 16:01:41.316][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-13 16:01:41.318][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-13 16:01:41.319][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-13 16:01:41.320][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-13 16:01:41.321][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-13 16:01:41.323][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-13 16:01:41.324][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-13 16:01:41.325][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-13 16:01:41.327][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-13 16:01:41.328][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-13 16:01:41.329][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-13 16:01:41.330][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-13 16:01:41.332][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-13 16:01:41.333][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-13 16:01:41.334][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-13 16:01:41.335][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-13 16:01:41.337][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-13 16:01:41.338][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-13 16:01:41.339][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-13 16:01:41.341][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-13 16:01:41.342][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-13 16:01:41.343][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-13 16:01:41.344][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-13 16:01:41.346][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-13 16:01:41.347][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-13 16:01:41.348][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-13 16:01:41.350][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-13 16:01:41.351][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-13 16:01:41.352][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-13 16:01:41.354][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-13 16:01:41.364][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-13 16:01:41.365][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-13 16:01:41.368][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:41.369][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.371][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:41.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:41.484][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-13 16:01:41.496][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-13 16:01:41.498][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.499][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.500][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.501][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:41.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.504][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.505][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-13 16:01:41.506][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-13 16:01:41.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:41.508][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.509][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-13 16:01:41.510][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-13 16:01:41.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-13 16:01:41.513][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:41.514][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:41.514][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:41.514][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:41.515][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-13 16:01:41.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:41.519][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:41.520][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:41.521][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:41.522][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-13 16:01:41.522][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-13 16:01:41.523][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:41.524][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:41.524][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:41.526][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-13 16:01:41.526][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-13 16:01:41.532][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-13 16:01:41.534][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-13 16:01:41.535][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-13 16:01:41.537][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-13 16:01:41.538][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-13 16:01:41.540][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-13 16:01:41.570][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-13 16:01:41.588][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-13 16:01:41.597][biodb::testThat]
biodb.INFO [2025-09-13 16:01:41.598][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-13 16:01:41.599][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:41.600][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:41.604][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-13 16:01:41.615][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:41.619][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:41.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:41.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:41.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:41.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:41.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:41.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:41.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:41.652][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.655][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.673][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:41.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.677][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.707][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:41.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:41.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:41.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.718][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.725][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:41.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:41.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.733][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.734][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:41.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.738][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:41.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.741][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:41.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:41.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.749][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:41.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:41.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.754][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:41.755][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:41.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.756][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:41.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:41.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.764][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.769][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:41.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:41.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.772][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:41.849][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-13 16:01:41.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:41.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:41.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.013][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.038][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.062][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.084][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.087][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.115][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.136][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.139][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.162][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.163][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.188][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.211][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.212][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.237][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.262][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.273][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.302][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.309][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.313][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.316][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.322][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.328][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.335][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.341][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.346][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.352][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.354][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.358][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.361][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.367][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.382][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-09-13 16:01:42.415][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:42.416][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:42.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:42.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:42.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:42.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:42.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:42.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:42.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:42.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.430][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.454][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.457][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.464][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.472][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.480][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.484][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.485][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.487][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.492][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:42.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.502][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.510][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.515][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:42.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.518][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.525][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:42.567][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-09-13 16:01:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.703][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.704][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.729][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.754][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.783][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.804][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:42.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.807][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.829][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.832][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.856][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.902][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.903][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.905][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.930][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.958][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:42.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.007][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.020][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.024][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.025][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.027][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.033][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.040][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.046][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.052][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.056][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.059][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.065][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.069][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.070][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.072][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.075][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.078][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.082][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.085][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.089][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-09-13 16:01:43.090][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:43.091][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:43.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:43.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:43.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:43.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:43.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.109][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.113][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.114][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.116][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.121][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.124][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.131][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.139][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.146][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.151][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.154][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.161][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.166][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.169][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.174][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.177][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.184][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:43.226][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-09-13 16:01:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:43.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.336][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.361][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.384][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.385][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.410][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.435][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.436][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.438][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.462][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.486][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.508][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.511][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.522][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.533][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.536][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.558][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.559][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.560][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.589][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.606][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.612][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.615][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.621][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.634][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.638][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.639][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.640][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.647][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.650][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.653][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.657][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.660][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.666][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:43.672][biodb::testThat]
biodb.INFO [2025-09-13 16:01:43.673][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-13 16:01:43.674][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:43.675][biodb::testThat]
biodb.DEBUG[2025-09-13 16:01:43.677][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-09-13 16:01:43.678][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-09-13 16:01:43.681][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:43.688][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-09-13 16:01:43.692][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-09-13 16:01:43.695][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-09-13 16:01:43.696][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:43.697][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-13 16:01:43.698][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:43.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:43.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:43.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:43.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:43.710][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.713][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.717][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.725][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.726][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.728][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.743][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.751][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.755][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.762][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.770][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.774][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.777][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.785][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.792][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:43.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:43.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:43.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:43.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:43.833][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.836][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.840][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.843][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.866][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.871][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.873][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.878][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:43.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.888][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.893][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.901][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.902][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.903][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:43.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:43.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.908][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.909][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:43.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:43.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:43.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:43.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:43.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:43.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.958][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.963][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.966][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.971][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.973][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.981][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.986][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:43.996][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.001][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:44.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.003][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.008][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.023][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:44.024][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.026][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.033][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:44.100][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-09-13 16:01:44.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:44.147][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.148][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-13 16:01:44.149][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.149][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:44.152][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.155][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:44.156][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-09-13 16:01:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:44.191][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-09-13 16:01:44.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-13 16:01:44.215][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:44.221][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-13 16:01:44.222][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:44.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:44.271][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:44.275][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:44.276][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:44.278][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-09-13 16:01:44.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.291][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.292][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.295][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:44.298][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.299][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-13 16:01:44.300][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.301][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:44.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:44.390][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:44.394][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:44.395][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-09-13 16:01:44.408][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.409][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-13 16:01:44.410][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.411][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:44.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.452][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:44.506][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.507][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-13 16:01:44.508][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.509][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.516][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.517][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-13 16:01:44.518][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.519][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.525][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.526][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-13 16:01:44.527][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.528][biodb::testThat]
biodb.DEBUG[2025-09-13 16:01:44.531][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-09-13 16:01:45.523][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-09-13 16:01:46.794][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.802][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-13 16:01:46.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.811][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:46.818][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.822][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.827][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:46.829][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.830][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-13 16:01:46.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.832][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:46.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:46.940][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:46.943][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:46.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:47.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:47.025][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:47.029][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:47.030][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-09-13 16:01:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:47.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:47.075][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:47.077][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:01:47.078][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:47.090][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-09-13 16:01:47.137][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:47.138][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:47.142][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-09-13 16:01:47.143][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.144][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:47.145][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:47.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.160][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.168][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.175][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.183][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.191][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.198][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.199][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.202][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.207][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.210][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.217][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.222][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.225][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.232][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.278][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-09-13 16:01:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:47.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:47.301][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:47.303][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:01:47.304][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:47.348][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-09-13 16:01:47.349][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:47.350][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:47.354][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-09-13 16:01:47.355][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:47.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:47.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.369][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.371][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.376][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.379][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.391][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.398][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.406][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.413][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.414][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.417][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.425][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.430][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.432][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.440][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.448][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.490][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-09-13 16:01:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:47.517][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:47.519][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:47.522][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:47.523][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:47.559][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-09-13 16:01:47.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:47.562][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:47.564][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-09-13 16:01:47.565][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:47.567][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:47.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.587][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.590][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.594][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.598][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.605][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.607][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.609][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.613][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.614][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.617][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.625][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.632][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.678][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-09-13 16:01:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:47.728][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-09-13 16:01:47.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:47.730][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:47.734][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-09-13 16:01:47.735][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.737][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:47.738][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:47.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.752][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.755][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.761][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.762][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.764][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.772][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.777][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.778][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.779][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.781][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.782][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.785][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.786][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.789][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.793][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.802][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.810][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.850][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-09-13 16:01:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:47.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:47.896][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-09-13 16:01:47.897][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:47.898][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:47.902][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-09-13 16:01:47.903][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:47.904][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:47.905][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:47.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:47.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:47.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:47.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:47.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:47.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:47.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:47.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.919][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:47.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:47.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.927][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.928][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:47.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:47.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.931][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:47.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:47.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.935][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:47.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.939][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.941][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:47.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.943][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.944][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:47.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:47.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.946][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.948][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.949][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.950][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.954][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.959][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.962][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:47.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:47.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.970][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.008][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-09-13 16:01:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.041][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-09-13 16:01:48.042][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.044][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.049][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-09-13 16:01:48.050][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.051][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.064][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.067][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.072][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.073][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.074][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.080][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.082][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.090][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.098][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.102][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.105][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.110][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.113][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.120][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.125][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.128][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.133][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.134][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.136][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.141][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.142][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.144][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.190][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-09-13 16:01:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.211][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-09-13 16:01:48.212][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.213][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.218][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-09-13 16:01:48.219][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.220][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.221][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.233][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.234][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.236][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.241][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.241][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.243][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.251][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.259][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.266][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.274][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.279][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.281][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.289][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.297][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.302][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.303][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.304][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.309][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.312][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.358][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-09-13 16:01:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.379][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-09-13 16:01:48.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.381][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.385][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-09-13 16:01:48.386][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.387][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.388][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.403][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.408][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.409][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.410][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.415][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.418][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.426][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.433][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.438][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.439][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.441][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.442][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.445][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.450][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.453][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.458][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.460][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.465][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.466][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.468][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.480][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.521][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-09-13 16:01:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.543][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-09-13 16:01:48.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.545][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.549][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-09-13 16:01:48.550][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.567][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.575][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.590][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.598][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.605][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.606][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.609][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.617][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.622][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.624][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.636][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.643][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.685][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-09-13 16:01:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.707][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-09-13 16:01:48.708][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.709][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.713][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-09-13 16:01:48.714][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.715][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.716][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.731][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.736][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.737][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.739][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.747][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.754][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.762][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.767][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.768][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.770][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.771][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.773][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.785][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.790][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.792][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.797][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.800][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.805][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.806][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.807][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.849][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-09-13 16:01:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:48.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:48.871][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-09-13 16:01:48.872][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:48.873][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:48.877][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-09-13 16:01:48.878][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:48.879][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:48.880][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:48.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:48.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:48.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:48.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:48.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:48.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:48.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:48.892][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.895][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.900][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.901][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.903][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.918][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.930][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:48.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.938][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.939][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.941][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:48.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.947][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.949][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.954][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.956][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.961][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.964][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.014][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-09-13 16:01:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.036][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-09-13 16:01:49.037][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.038][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.042][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-09-13 16:01:49.043][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.045][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.060][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.065][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.067][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.079][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.087][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.094][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.102][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.103][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.106][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.112][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.113][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.118][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.119][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.121][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.129][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.130][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.134][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.135][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.136][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.178][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-09-13 16:01:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.200][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-09-13 16:01:49.201][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.202][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.205][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-09-13 16:01:49.206][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.207][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.227][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.232][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.233][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.234][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.242][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.249][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.257][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.258][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.261][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.269][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.274][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.276][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.284][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.292][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.331][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-09-13 16:01:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.353][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-09-13 16:01:49.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.355][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.358][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-09-13 16:01:49.359][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.360][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.361][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.380][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.388][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.395][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.403][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.407][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.410][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.411][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.414][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.427][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.429][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.434][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.437][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.443][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.445][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.483][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-09-13 16:01:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.504][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-09-13 16:01:49.505][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.507][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.510][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-09-13 16:01:49.511][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.529][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.532][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.539][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.544][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.547][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.554][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.562][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.567][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.570][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.573][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.581][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.589][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.594][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.595][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.596][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.601][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.604][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.646][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-09-13 16:01:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.671][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-09-13 16:01:49.672][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.674][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.678][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-09-13 16:01:49.679][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.681][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.695][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.700][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.701][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.703][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.718][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.726][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.733][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.737][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.745][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.752][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.757][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.760][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.810][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-09-13 16:01:49.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.836][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-09-13 16:01:49.837][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.838][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.842][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-09-13 16:01:49.843][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.844][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.864][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.865][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.867][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.872][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.875][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.890][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.895][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.896][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.898][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.899][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.900][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.902][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.909][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.925][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.932][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.978][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-09-13 16:01:49.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.999][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-09-13 16:01:50.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.002][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.006][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-09-13 16:01:50.007][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.008][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.009][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.021][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.024][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.029][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.030][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.031][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.036][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.039][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.047][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.054][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.060][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.062][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.063][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.066][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.073][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.081][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.089][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.090][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.096][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.142][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-09-13 16:01:50.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.163][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-09-13 16:01:50.164][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.165][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.169][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-09-13 16:01:50.170][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.184][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.187][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.194][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.202][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.210][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.217][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.225][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.226][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.229][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.230][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.236][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.244][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.252][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.263][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.305][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-09-13 16:01:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.327][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-09-13 16:01:50.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.329][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.332][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-09-13 16:01:50.333][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.334][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.335][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.349][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.354][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.357][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.362][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.365][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.372][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.380][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.388][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.389][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.392][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.396][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.397][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.399][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.411][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.419][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.426][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.468][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-09-13 16:01:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.490][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-09-13 16:01:50.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.492][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.495][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-09-13 16:01:50.496][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.498][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.510][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.513][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.521][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.528][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.536][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.544][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.549][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.550][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.555][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.557][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.560][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.561][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.568][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.575][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.583][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.588][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.589][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.590][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.632][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-09-13 16:01:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:50.659][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:50.662][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:50.665][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:50.666][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:51.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:51.175][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:51.177][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-09-13 16:01:51.178][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:51.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:51.183][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:51.185][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-09-13 16:01:51.186][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.198][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-09-13 16:01:51.199][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.201][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.205][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-09-13 16:01:51.206][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.207][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.223][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.231][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.238][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.246][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.254][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.262][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.267][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.270][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.277][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.282][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.283][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.290][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.295][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.298][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.347][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-09-13 16:01:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.390][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-09-13 16:01:51.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.392][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.396][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-09-13 16:01:51.397][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.411][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.414][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.429][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.442][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.450][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.457][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.461][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.469][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.474][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.477][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.485][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.489][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.492][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.535][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-09-13 16:01:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:51.562][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:51.565][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:51.568][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:51.569][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:52.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:52.040][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:52.043][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:52.044][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-13 16:01:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-13 16:01:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:52.517][biodb::testThat]
biodb.INFO [2025-09-13 16:01:52.518][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-13 16:01:52.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:52.520][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.527][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:01:52.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:52.595][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:52.596][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:01:52.597][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:52.626][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:52.628][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:01:52.630][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:01:52.631][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.674][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:01:52.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.693][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:52.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:52.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:52.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.699][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.703][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.705][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.708][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:01:52.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.749][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:52.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:52.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:52.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.755][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.763][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.769][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.770][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:52.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:01:52.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.801][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:52.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:52.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:52.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.807][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.811][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.813][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:52.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.817][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:01:52.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:01:52.832][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:01:52.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:01:52.846][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:52.848][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-13 16:01:52.849][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:52.850][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:52.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:53.169][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:53.170][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:53.172][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:53.173][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:53.622][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:53.623][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:53.624][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:53.627][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:53.929][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:53.930][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:53.932][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:53.934][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:54.581][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:54.583][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:54.585][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:54.589][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:55.155][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:55.156][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:55.158][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:55.161][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:55.635][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:55.637][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:55.639][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:55.643][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:55.969][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:55.971][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:55.974][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:55.977][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:56.453][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:56.455][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:56.457][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:56.460][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:56.784][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:56.785][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:56.788][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:56.790][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:57.266][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:57.268][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:57.270][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:57.292][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:57.605][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:57.607][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:57.609][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:57.611][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:58.089][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:58.091][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:58.093][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:58.097][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:58.425][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:58.426][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:58.428][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:58.430][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:58.908][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:58.910][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:58.912][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:58.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:59.243][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:59.245][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:59.248][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:59.250][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:59.726][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:59.729][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:59.731][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:59.735][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:00.065][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:00.067][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:00.069][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:00.071][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:00.610][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:00.613][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:00.615][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:00.619][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:00.948][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:00.950][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:00.952][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:00.955][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:01.472][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:01.500][biodb::testThat]
biodb.INFO [2025-09-13 16:02:01.502][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:01.504][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:01.506][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:01.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.519][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:01.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:01.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:01.659][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:01.660][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:01.661][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:01.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:01.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:01.687][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:01.689][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:01.690][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:01.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:01.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:01.759][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:01.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.828][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:01.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:01.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:01.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.839][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.849][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.853][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.854][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:02:01.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.889][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:01.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:01.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:01.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.899][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.900][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.901][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.905][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:02:01.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:01.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.937][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:01.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:01.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:01.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.943][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.947][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.949][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:01.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.952][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.953][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:01.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:01.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:01.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:02:01.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:01.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:01.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:01.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:01.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:01.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:01.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:01.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:01.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:01.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:01.983][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-13 16:02:02.002][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:02.003][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:02.004][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:02.296][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:02.297][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:02.298][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:02.300][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:02.739][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:02.740][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:02.741][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:02.743][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:03.036][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:03.037][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:03.038][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:03.040][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:03.480][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:03.481][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:03.482][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:03.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:03.774][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:03.776][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:03.778][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:03.780][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:04.255][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:04.257][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:04.259][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:04.263][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:04.590][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:04.591][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:04.594][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:04.596][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:05.074][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:05.076][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:05.079][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:05.083][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:05.411][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:05.412][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:05.415][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:05.417][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:05.895][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:05.897][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:05.899][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:05.903][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:06.231][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:06.233][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:06.236][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:06.240][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:06.680][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:06.682][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:06.683][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:06.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:06.978][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:06.980][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:06.981][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:06.983][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:07.423][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:07.424][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:07.425][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:07.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:07.722][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:07.723][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:07.724][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:07.726][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:08.166][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:08.167][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:08.168][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:08.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:08.463][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:08.464][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:08.466][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:08.467][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:08.907][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:08.908][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:08.909][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:08.911][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:09.204][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:09.205][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:09.206][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:09.208][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:09.648][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:09.672][biodb::testThat]
biodb.INFO [2025-09-13 16:02:09.673][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:09.674][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:09.675][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:09.678][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.707][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.711][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:09.773][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:09.776][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:09.778][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:09.778][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:09.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:09.801][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:09.804][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:09.806][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:09.807][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:09.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.855][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:09.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.873][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.880][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.889][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:02:09.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.921][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.927][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.931][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.933][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.937][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:02:09.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.968][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.974][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.978][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.984][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:10.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:02:10.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:10.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:10.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:10.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:10.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:10.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:10.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:10.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:10.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:10.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:10.018][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-13 16:02:10.018][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:10.019][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:10.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:10.311][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:10.312][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:10.314][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:10.315][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:10.755][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:10.756][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:10.757][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:10.759][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:11.049][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:11.050][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:11.051][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:11.053][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:11.493][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:11.494][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:11.495][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:11.496][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:11.787][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:11.788][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:11.789][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:11.791][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:12.231][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:12.232][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:12.233][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:12.235][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:12.525][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:12.526][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:12.528][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:12.529][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:12.970][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:12.971][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:12.972][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:12.974][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:13.264][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:13.265][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:13.267][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:13.268][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:13.721][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:13.722][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:13.723][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:13.725][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:14.015][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:14.016][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:14.017][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:14.019][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:14.458][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:14.460][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:14.460][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:14.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:14.754][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:14.756][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:14.757][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:14.758][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:15.198][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:15.199][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:15.200][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:15.202][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:15.493][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:15.494][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:15.495][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:15.497][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:15.935][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:15.936][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:15.937][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:15.939][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:16.229][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:16.230][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:16.233][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:16.235][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:16.717][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:16.719][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:16.721][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:16.725][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:17.070][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:17.071][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:17.074][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:17.076][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:17.554][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-09-13 16:02:17.747][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:17.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:17.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.750][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:17.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:17.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.754][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:02:17.755][biodb::testThat]
biodb.INFO [2025-09-13 16:02:17.756][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-09-13 16:02:17.757][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:17.758][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.764][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:17.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:17.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:17.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:17.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:17.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:17.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:17.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:17.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:17.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:17.830][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-13 16:02:17.831][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:17.832][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:17.833][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:18.125][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:18.126][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:18.127][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:18.129][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:18.570][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:18.571][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:18.572][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:18.573][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:18.863][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:18.864][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:18.866][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:18.867][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:19.306][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:19.307][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:19.308][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:19.310][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:19.601][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:19.602][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:19.604][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:19.605][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:20.047][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:20.048][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:20.049][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:20.050][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:20.346][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:20.347][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:20.348][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:20.350][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:20.822][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:20.824][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:20.826][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:20.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:21.178][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:21.179][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:21.181][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:21.183][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:21.650][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:21.652][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:21.654][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:21.658][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:21.985][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:21.987][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:21.989][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:21.992][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:22.467][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:22.469][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:22.470][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:22.473][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:22.785][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:22.786][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:22.789][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:22.791][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:23.248][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:23.250][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:23.251][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:23.254][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:23.596][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:23.597][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:23.599][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:23.601][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:24.058][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:24.060][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:24.061][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:24.064][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:24.389][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:24.390][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:24.392][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:24.394][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:24.853][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:24.855][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:24.856][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:24.859][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:25.171][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:25.173][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:25.175][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:25.178][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:25.639][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:25.659][biodb::testThat]
biodb.INFO [2025-09-13 16:02:25.661][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:25.663][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:25.665][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:25.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:25.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:25.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:25.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:25.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:25.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:25.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:25.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:25.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:25.784][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:25.785][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:25.786][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:25.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:25.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:25.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:25.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:25.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:25.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:25.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:25.809][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:25.812][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-13 16:02:25.813][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:25.814][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:25.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:25.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:25.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:25.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:25.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:25.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:25.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:25.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:25.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:25.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:25.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:25.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:25.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:25.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:25.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:25.857][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:25.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:25.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:25.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:25.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:25.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:25.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:25.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:25.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:25.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:25.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:25.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:25.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.956][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:25.957][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:25.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:25.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:25.960][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:25.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:25.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:25.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.964][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:25.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:25.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.967][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:25.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.971][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:25.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:25.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.975][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:25.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.978][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:25.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:25.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.985][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.986][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:25.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.989][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.990][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.991][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:25.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.993][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.994][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:25.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:25.996][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:25.997][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:25.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:25.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.000][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.004][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.006][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.007][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.008][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.012][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.015][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.016][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.022][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.023][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.029][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.033][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.034][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.037][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.040][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.041][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.044][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.047][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.048][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.049][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.052][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:26.053][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:26.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.057][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.060][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.062][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.064][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.067][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.071][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.074][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.075][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.076][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.078][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.081][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.082][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.083][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.085][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.086][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.089][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.092][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.093][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-09-13 16:02:26.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:26.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:26.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:26.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:26.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:26.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:26.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.327][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.327][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:26.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:26.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:26.330][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.334][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.335][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.336][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.337][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.341][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.342][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.344][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.352][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.355][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.356][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.359][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.360][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.361][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.362][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.363][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.364][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.366][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.367][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.368][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.369][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.370][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.371][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.373][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.377][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.377][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.380][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.384][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.385][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.387][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.388][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.389][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.391][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.394][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.398][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.399][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.402][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.405][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.406][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.407][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.409][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.410][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.411][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.413][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.416][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.417][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.418][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.419][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.425][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.429][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.433][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.436][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.440][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.443][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.444][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.447][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.451][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.451][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.454][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.455][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.458][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.461][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.462][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-09-13 16:02:26.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:26.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:26.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:26.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:26.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:26.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:26.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.702][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.703][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:26.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:26.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:26.706][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:26.707][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.710][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.713][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.717][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.718][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.719][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.724][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.728][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.731][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.732][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.733][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.739][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.739][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.742][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.743][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.746][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.749][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.751][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.753][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.754][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.755][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.757][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.760][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.761][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.764][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.771][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:26.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.775][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.778][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.786][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.789][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.796][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.797][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:26.798][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:26.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.802][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.805][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.809][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.813][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.816][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.820][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.823][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.827][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.828][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.830][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.834][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.835][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.836][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.837][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.838][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:26.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:26.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:26.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:26.966][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-09-13 16:02:26.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:26.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:26.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:26.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:26.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:26.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:26.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:26.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:26.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:26.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:26.984][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-13 16:02:26.985][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:26.986][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:26.988][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:27.280][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:27.281][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:27.282][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:27.284][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:27.727][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:27.728][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:27.729][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:27.731][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:28.043][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:28.044][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:28.046][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:28.048][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:28.490][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:28.491][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:28.492][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:28.494][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:28.858][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:28.859][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:28.861][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:28.863][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:29.342][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:29.344][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:29.346][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:29.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:29.679][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:29.681][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:29.683][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:29.686][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:30.165][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:30.167][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:30.170][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:30.174][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:30.503][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:30.505][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:30.508][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:30.510][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:30.989][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:30.992][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:30.994][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:30.998][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:31.325][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:31.327][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:31.330][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:31.332][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:31.810][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:31.812][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:31.814][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:31.818][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:32.167][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:32.168][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:32.171][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:32.173][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:32.651][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:32.653][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:32.655][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:32.659][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:33.014][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:33.015][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:33.018][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:33.020][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:33.498][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:33.500][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:33.502][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:33.506][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:33.832][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:33.834][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:33.837][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:33.840][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:34.317][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:34.318][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:34.320][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:34.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:34.632][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:34.633][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:34.636][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:34.638][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:35.116][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:35.141][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-13 16:02:35.144][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-13 16:02:35.146][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-13 16:02:35.148][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:35.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:35.151][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:35.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:35.155][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:35.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)