Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-08-06 17:42 -0400 (Tue, 06 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4756 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4490 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4519 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4468 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-08-05 23:23:44 -0400 (Mon, 05 Aug 2024) |
EndedAt: 2024-08-05 23:29:30 -0400 (Mon, 05 Aug 2024) |
EllapsedTime: 346.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 54.815 2.046 57.072 FSmethod 52.579 2.141 54.991 corr_plot 51.738 2.166 54.217 pred_ensembel 15.858 0.293 13.566 enrichfindP 0.512 0.072 6.815 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 103.896375 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.925653 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 97.730192 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.232573 final value 94.275362 converged Fitting Repeat 5 # weights: 103 initial value 95.944395 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.839013 iter 10 value 92.914910 final value 92.845238 converged Fitting Repeat 2 # weights: 305 initial value 97.759829 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 110.767720 iter 10 value 94.275362 iter 10 value 94.275362 iter 10 value 94.275362 final value 94.275362 converged Fitting Repeat 4 # weights: 305 initial value 97.639630 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.640397 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 106.886411 iter 10 value 94.242919 final value 94.241589 converged Fitting Repeat 2 # weights: 507 initial value 95.488176 final value 94.275362 converged Fitting Repeat 3 # weights: 507 initial value 104.770477 iter 10 value 93.424059 iter 20 value 89.493965 iter 30 value 89.194363 iter 40 value 89.189414 final value 89.189350 converged Fitting Repeat 4 # weights: 507 initial value 101.752912 iter 10 value 92.635448 iter 20 value 92.634655 final value 92.634650 converged Fitting Repeat 5 # weights: 507 initial value 98.289307 iter 10 value 90.951087 iter 20 value 84.663235 iter 30 value 84.432855 iter 40 value 82.846779 final value 82.846754 converged Fitting Repeat 1 # weights: 103 initial value 97.111181 iter 10 value 94.488636 iter 20 value 94.026232 final value 93.977919 converged Fitting Repeat 2 # weights: 103 initial value 102.551574 iter 10 value 94.487628 iter 20 value 94.029699 iter 30 value 93.966330 iter 40 value 86.358099 iter 50 value 85.589708 iter 60 value 85.309016 iter 70 value 85.293706 iter 80 value 85.279399 iter 90 value 84.071527 iter 100 value 83.754550 final value 83.754550 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 113.018830 iter 10 value 93.667015 iter 20 value 86.226851 iter 30 value 85.005144 iter 40 value 83.940410 iter 50 value 83.801628 iter 60 value 83.747926 final value 83.746304 converged Fitting Repeat 4 # weights: 103 initial value 101.296988 iter 10 value 94.507225 iter 20 value 91.656123 iter 30 value 88.001339 iter 40 value 86.532410 iter 50 value 83.971116 iter 60 value 83.789666 iter 70 value 83.748073 final value 83.746304 converged Fitting Repeat 5 # weights: 103 initial value 97.400090 iter 10 value 94.093947 iter 20 value 93.916624 iter 30 value 89.346933 iter 40 value 85.367625 iter 50 value 84.851600 iter 60 value 84.108265 iter 70 value 84.009394 iter 80 value 83.757600 iter 90 value 83.746389 final value 83.746304 converged Fitting Repeat 1 # weights: 305 initial value 101.127547 iter 10 value 94.258210 iter 20 value 87.154800 iter 30 value 85.673882 iter 40 value 83.855915 iter 50 value 82.687113 iter 60 value 82.445042 iter 70 value 82.089656 iter 80 value 81.761197 iter 90 value 81.567073 iter 100 value 81.077594 final value 81.077594 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.638024 iter 10 value 93.666544 iter 20 value 90.649959 iter 30 value 89.700806 iter 40 value 82.337391 iter 50 value 81.536100 iter 60 value 80.696866 iter 70 value 80.361284 iter 80 value 80.309670 iter 90 value 80.203012 iter 100 value 80.174876 final value 80.174876 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 125.897069 iter 10 value 94.497467 iter 20 value 93.741276 iter 30 value 86.438566 iter 40 value 86.171215 iter 50 value 84.123040 iter 60 value 82.373839 iter 70 value 81.969493 iter 80 value 81.852693 iter 90 value 81.626472 iter 100 value 81.389603 final value 81.389603 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 128.628856 iter 10 value 94.342854 iter 20 value 93.093754 iter 30 value 86.502915 iter 40 value 82.711518 iter 50 value 82.168506 iter 60 value 81.871720 iter 70 value 81.733144 iter 80 value 80.901471 iter 90 value 80.708585 iter 100 value 80.475889 final value 80.475889 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.514621 iter 10 value 94.513388 iter 20 value 93.714230 iter 30 value 87.109463 iter 40 value 84.418618 iter 50 value 83.639725 iter 60 value 83.506456 iter 70 value 83.488915 iter 80 value 83.465966 iter 90 value 83.445181 iter 100 value 81.854845 final value 81.854845 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.949838 iter 10 value 95.793009 iter 20 value 84.958628 iter 30 value 83.167330 iter 40 value 81.555871 iter 50 value 81.142412 iter 60 value 80.556288 iter 70 value 80.279162 iter 80 value 80.113512 iter 90 value 79.989351 iter 100 value 79.890647 final value 79.890647 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 129.262433 iter 10 value 95.927992 iter 20 value 94.006137 iter 30 value 93.913890 iter 40 value 93.282604 iter 50 value 83.423670 iter 60 value 82.960057 iter 70 value 81.948783 iter 80 value 81.169131 iter 90 value 80.991309 iter 100 value 80.810385 final value 80.810385 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.986653 iter 10 value 94.682781 iter 20 value 86.881099 iter 30 value 84.987710 iter 40 value 82.549142 iter 50 value 81.849536 iter 60 value 81.231146 iter 70 value 80.170055 iter 80 value 79.998843 iter 90 value 79.625657 iter 100 value 79.357610 final value 79.357610 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.902601 iter 10 value 94.710904 iter 20 value 86.050596 iter 30 value 84.260999 iter 40 value 82.692541 iter 50 value 81.186861 iter 60 value 80.879506 iter 70 value 80.550380 iter 80 value 80.314014 iter 90 value 80.232602 iter 100 value 80.201707 final value 80.201707 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 105.313714 iter 10 value 92.434748 iter 20 value 86.108763 iter 30 value 85.236914 iter 40 value 84.235964 iter 50 value 83.699200 iter 60 value 83.439445 iter 70 value 83.365671 iter 80 value 83.316872 iter 90 value 83.184555 iter 100 value 82.079548 final value 82.079548 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.120884 iter 10 value 94.485854 final value 94.484213 converged Fitting Repeat 2 # weights: 103 initial value 95.868275 iter 10 value 94.485786 iter 20 value 94.478396 iter 30 value 91.082548 iter 40 value 82.536232 iter 50 value 81.843615 iter 60 value 81.763462 final value 81.761224 converged Fitting Repeat 3 # weights: 103 initial value 97.344854 final value 94.485795 converged Fitting Repeat 4 # weights: 103 initial value 97.956013 iter 10 value 94.486063 iter 20 value 94.384212 iter 30 value 87.991307 final value 87.955809 converged Fitting Repeat 5 # weights: 103 initial value 97.586544 final value 94.277155 converged Fitting Repeat 1 # weights: 305 initial value 102.265811 iter 10 value 94.488999 iter 20 value 94.440820 iter 30 value 85.344327 iter 40 value 82.065553 iter 50 value 82.053822 iter 60 value 82.050822 final value 82.050819 converged Fitting Repeat 2 # weights: 305 initial value 136.597677 iter 10 value 94.281056 iter 20 value 94.101596 iter 30 value 92.660644 iter 40 value 86.438997 iter 50 value 85.433951 iter 60 value 85.027737 iter 70 value 85.018833 iter 80 value 85.017962 iter 90 value 84.971043 iter 100 value 84.590476 final value 84.590476 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 117.218413 iter 10 value 94.489159 iter 20 value 94.339275 iter 30 value 94.229348 iter 30 value 94.229347 iter 40 value 93.872580 iter 50 value 93.872183 final value 93.872180 converged Fitting Repeat 4 # weights: 305 initial value 106.529705 iter 10 value 94.501114 iter 20 value 94.496017 iter 30 value 86.995486 iter 40 value 84.465321 iter 50 value 84.456972 iter 60 value 84.453150 iter 70 value 84.452583 iter 70 value 84.452583 final value 84.452583 converged Fitting Repeat 5 # weights: 305 initial value 103.070283 iter 10 value 93.489314 iter 20 value 93.486069 iter 30 value 93.356202 iter 40 value 92.379509 iter 50 value 91.066187 iter 60 value 90.905829 final value 90.905682 converged Fitting Repeat 1 # weights: 507 initial value 106.050196 iter 10 value 94.292463 iter 20 value 94.281017 iter 30 value 94.277131 iter 40 value 94.276270 iter 50 value 93.830412 iter 60 value 88.241165 iter 70 value 88.239474 iter 80 value 88.109333 iter 90 value 87.502890 iter 100 value 84.359080 final value 84.359080 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.004098 iter 10 value 94.283730 iter 20 value 94.230288 iter 30 value 89.914229 iter 40 value 85.278143 iter 40 value 85.278142 iter 40 value 85.278142 final value 85.278142 converged Fitting Repeat 3 # weights: 507 initial value 101.184709 iter 10 value 92.941926 iter 20 value 92.930663 iter 30 value 92.915628 iter 40 value 87.414237 iter 50 value 82.948642 iter 60 value 82.615926 iter 70 value 82.607953 iter 80 value 82.597398 iter 90 value 82.586013 iter 100 value 82.582236 final value 82.582236 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.268631 iter 10 value 94.492355 iter 20 value 89.336145 iter 30 value 82.772101 iter 40 value 82.219768 iter 50 value 82.142916 final value 82.142873 converged Fitting Repeat 5 # weights: 507 initial value 101.610864 iter 10 value 94.284265 iter 20 value 94.254809 final value 94.230532 converged Fitting Repeat 1 # weights: 103 initial value 97.902626 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 98.672912 iter 10 value 94.053192 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.305809 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 103.192563 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.036584 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 102.546247 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 95.447827 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 97.743376 iter 10 value 94.035366 final value 94.032967 converged Fitting Repeat 4 # weights: 305 initial value 107.884285 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 102.499571 iter 10 value 93.886056 iter 10 value 93.886056 iter 10 value 93.886056 final value 93.886056 converged Fitting Repeat 1 # weights: 507 initial value 102.418190 final value 94.052911 converged Fitting Repeat 2 # weights: 507 initial value 101.818875 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 95.351299 iter 10 value 93.869295 final value 93.868979 converged Fitting Repeat 4 # weights: 507 initial value 114.670037 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 98.337553 iter 10 value 93.566579 iter 20 value 92.411103 iter 30 value 85.268219 iter 40 value 84.370768 iter 50 value 84.314950 iter 60 value 84.314740 iter 60 value 84.314740 final value 84.314740 converged Fitting Repeat 1 # weights: 103 initial value 98.548142 iter 10 value 94.005160 iter 20 value 92.975069 iter 30 value 84.584715 iter 40 value 83.225270 iter 50 value 82.474289 iter 60 value 82.038174 iter 70 value 81.846473 iter 80 value 80.950169 iter 90 value 80.683851 iter 100 value 80.632973 final value 80.632973 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 113.954051 iter 10 value 94.062029 iter 20 value 94.056188 iter 30 value 93.592468 iter 40 value 93.534293 iter 50 value 93.503564 iter 60 value 93.449545 final value 93.449066 converged Fitting Repeat 3 # weights: 103 initial value 103.026025 iter 10 value 93.861981 iter 20 value 86.654415 iter 30 value 83.213954 iter 40 value 83.080258 iter 50 value 82.940088 iter 60 value 82.932584 iter 70 value 82.886932 iter 80 value 82.838167 final value 82.837467 converged Fitting Repeat 4 # weights: 103 initial value 95.702372 iter 10 value 94.057530 iter 20 value 92.632691 iter 30 value 85.227760 iter 40 value 83.264184 iter 50 value 81.795368 iter 60 value 81.677807 iter 70 value 81.615023 iter 80 value 81.335116 iter 90 value 81.070150 final value 81.065794 converged Fitting Repeat 5 # weights: 103 initial value 102.089569 iter 10 value 94.056678 iter 20 value 93.896366 iter 30 value 89.746928 iter 40 value 89.010544 iter 50 value 88.848113 iter 60 value 86.729754 iter 70 value 83.073729 iter 80 value 81.497468 iter 90 value 81.377487 iter 100 value 81.276385 final value 81.276385 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 99.133135 iter 10 value 93.844913 iter 20 value 88.967053 iter 30 value 85.647413 iter 40 value 85.229042 iter 50 value 85.132027 iter 60 value 84.529937 iter 70 value 84.356450 iter 80 value 83.509666 iter 90 value 82.075894 iter 100 value 81.861177 final value 81.861177 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.163879 iter 10 value 94.887237 iter 20 value 94.070706 iter 30 value 88.256015 iter 40 value 86.017591 iter 50 value 84.366338 iter 60 value 84.118730 iter 70 value 84.111592 iter 80 value 83.405347 iter 90 value 81.994898 iter 100 value 81.682127 final value 81.682127 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.823387 iter 10 value 94.010648 iter 20 value 92.738949 iter 30 value 86.636177 iter 40 value 86.314906 iter 50 value 86.240729 iter 60 value 86.183159 iter 70 value 84.289053 iter 80 value 81.338312 iter 90 value 80.084982 iter 100 value 80.062324 final value 80.062324 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.268294 iter 10 value 94.156296 iter 20 value 92.520343 iter 30 value 86.378733 iter 40 value 86.047751 iter 50 value 84.918421 iter 60 value 84.640180 iter 70 value 81.945141 iter 80 value 81.209121 iter 90 value 80.935102 iter 100 value 80.845808 final value 80.845808 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.592419 iter 10 value 93.488658 iter 20 value 85.874765 iter 30 value 84.434076 iter 40 value 83.636507 iter 50 value 83.466337 iter 60 value 83.255118 iter 70 value 83.205158 iter 80 value 83.160314 iter 90 value 83.070805 iter 100 value 82.183429 final value 82.183429 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.040182 iter 10 value 94.059009 iter 20 value 94.051483 iter 30 value 88.863097 iter 40 value 82.691188 iter 50 value 82.413685 iter 60 value 82.024646 iter 70 value 80.549658 iter 80 value 80.004324 iter 90 value 79.919540 iter 100 value 79.551701 final value 79.551701 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 127.212273 iter 10 value 94.196802 iter 20 value 93.357329 iter 30 value 85.076233 iter 40 value 84.610376 iter 50 value 81.829845 iter 60 value 81.369203 iter 70 value 81.098328 iter 80 value 80.813579 iter 90 value 80.397109 iter 100 value 79.828129 final value 79.828129 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.104312 iter 10 value 93.921664 iter 20 value 90.469082 iter 30 value 88.204696 iter 40 value 85.517762 iter 50 value 83.424299 iter 60 value 83.129120 iter 70 value 82.970212 iter 80 value 82.535991 iter 90 value 80.507158 iter 100 value 80.046279 final value 80.046279 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.897847 iter 10 value 94.473221 iter 20 value 93.142942 iter 30 value 87.645089 iter 40 value 81.512637 iter 50 value 81.275554 iter 60 value 81.213747 iter 70 value 80.881342 iter 80 value 80.729759 iter 90 value 80.618051 iter 100 value 80.019079 final value 80.019079 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.493521 iter 10 value 94.070963 iter 20 value 88.751224 iter 30 value 86.745205 iter 40 value 85.397648 iter 50 value 83.982018 iter 60 value 82.143922 iter 70 value 81.606624 iter 80 value 81.318380 iter 90 value 81.290310 iter 100 value 81.068182 final value 81.068182 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.265828 final value 94.054581 converged Fitting Repeat 2 # weights: 103 initial value 96.209555 final value 94.054518 converged Fitting Repeat 3 # weights: 103 initial value 97.782908 final value 94.054515 converged Fitting Repeat 4 # weights: 103 initial value 99.462162 final value 94.051750 converged Fitting Repeat 5 # weights: 103 initial value 94.087389 iter 10 value 94.054537 iter 20 value 94.052698 iter 30 value 93.037095 iter 40 value 87.628739 iter 50 value 87.624779 iter 60 value 87.573701 iter 70 value 86.796988 iter 80 value 85.932807 iter 90 value 85.911784 iter 100 value 85.910445 final value 85.910445 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 101.653440 iter 10 value 94.058262 final value 94.052936 converged Fitting Repeat 2 # weights: 305 initial value 103.322821 iter 10 value 94.058399 iter 20 value 93.966642 iter 30 value 90.591151 iter 40 value 80.939435 iter 50 value 80.928476 iter 60 value 79.871324 iter 70 value 79.801196 iter 80 value 79.713592 iter 90 value 79.162896 iter 100 value 78.256897 final value 78.256897 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.660483 iter 10 value 94.057839 iter 20 value 94.029857 iter 30 value 89.002920 iter 40 value 88.662608 iter 50 value 88.390190 iter 60 value 87.984076 iter 70 value 87.974004 iter 80 value 87.088756 iter 90 value 81.355642 iter 100 value 79.843669 final value 79.843669 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.318520 iter 10 value 94.055752 iter 20 value 94.049562 final value 94.033212 converged Fitting Repeat 5 # weights: 305 initial value 112.042743 iter 10 value 94.057182 iter 20 value 93.914537 iter 30 value 85.906394 iter 40 value 84.814070 iter 50 value 80.930284 iter 60 value 80.017551 iter 70 value 79.807948 iter 80 value 79.768750 iter 90 value 79.725935 iter 100 value 79.706709 final value 79.706709 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 100.844693 iter 10 value 93.057342 iter 20 value 92.756731 iter 30 value 92.756164 iter 40 value 92.752212 iter 50 value 92.733436 iter 60 value 91.752128 iter 70 value 83.875514 iter 80 value 80.688326 iter 90 value 79.526370 iter 100 value 79.435693 final value 79.435693 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 112.011805 iter 10 value 92.876533 iter 20 value 89.503563 iter 30 value 89.481936 final value 89.481477 converged Fitting Repeat 3 # weights: 507 initial value 115.608060 iter 10 value 94.041547 iter 20 value 94.033733 iter 30 value 91.562493 iter 40 value 87.606550 iter 50 value 87.605525 iter 60 value 85.587734 iter 70 value 84.611985 iter 80 value 81.194254 iter 90 value 80.018394 iter 100 value 80.011324 final value 80.011324 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 119.646282 iter 10 value 94.101031 iter 20 value 94.091004 iter 30 value 94.078729 iter 40 value 87.813081 iter 50 value 82.304712 iter 60 value 82.153535 iter 70 value 81.868728 iter 80 value 81.847483 iter 90 value 81.771707 iter 100 value 81.631516 final value 81.631516 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 96.456448 iter 10 value 94.041050 iter 20 value 94.013014 final value 94.011791 converged Fitting Repeat 1 # weights: 103 initial value 113.438568 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.595098 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.973806 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 112.714330 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 98.442107 final value 94.323810 converged Fitting Repeat 1 # weights: 305 initial value 103.597273 iter 10 value 93.773031 final value 93.772973 converged Fitting Repeat 2 # weights: 305 initial value 112.174865 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.895443 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 107.425594 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 97.256543 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 105.531463 iter 10 value 92.749332 iter 20 value 87.355273 iter 30 value 85.743846 iter 40 value 85.311051 iter 40 value 85.311050 iter 40 value 85.311050 final value 85.311050 converged Fitting Repeat 2 # weights: 507 initial value 119.302588 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 121.101484 final value 93.935238 converged Fitting Repeat 4 # weights: 507 initial value 96.769330 iter 10 value 89.451443 iter 20 value 83.874514 final value 83.874396 converged Fitting Repeat 5 # weights: 507 initial value 102.981675 iter 10 value 93.772978 final value 93.772973 converged Fitting Repeat 1 # weights: 103 initial value 99.696553 iter 10 value 93.431907 iter 20 value 93.295730 iter 30 value 93.158310 iter 40 value 88.899449 iter 50 value 87.838041 iter 60 value 86.215739 iter 70 value 84.781307 iter 80 value 84.658436 iter 90 value 84.577618 iter 100 value 84.557495 final value 84.557495 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 97.881887 iter 10 value 94.487227 iter 20 value 93.470533 iter 30 value 93.154820 iter 40 value 87.181268 iter 50 value 83.316035 iter 60 value 80.966658 iter 70 value 79.857796 final value 79.849947 converged Fitting Repeat 3 # weights: 103 initial value 96.838158 iter 10 value 94.488299 iter 20 value 93.969198 iter 30 value 85.739259 iter 40 value 82.941841 iter 50 value 82.537088 iter 60 value 82.499544 iter 70 value 82.478416 final value 82.463687 converged Fitting Repeat 4 # weights: 103 initial value 106.731518 iter 10 value 94.488564 iter 20 value 93.441224 iter 30 value 93.176794 iter 40 value 90.302847 iter 50 value 83.829759 iter 60 value 82.840121 iter 70 value 82.581348 iter 80 value 82.208376 iter 90 value 81.865150 iter 100 value 80.358654 final value 80.358654 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.038661 iter 10 value 94.196500 iter 20 value 93.392354 iter 30 value 93.032963 iter 40 value 86.592281 iter 50 value 85.870565 iter 60 value 83.587768 iter 70 value 82.772378 iter 80 value 82.639099 iter 90 value 82.406300 iter 100 value 82.373874 final value 82.373874 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 102.686631 iter 10 value 91.487331 iter 20 value 87.219611 iter 30 value 85.917340 iter 40 value 82.939584 iter 50 value 82.498710 iter 60 value 81.692712 iter 70 value 79.893551 iter 80 value 79.135543 iter 90 value 78.684865 iter 100 value 78.603733 final value 78.603733 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.599128 iter 10 value 94.419188 iter 20 value 93.387936 iter 30 value 90.461676 iter 40 value 86.672444 iter 50 value 83.793227 iter 60 value 82.845845 iter 70 value 79.939990 iter 80 value 78.781686 iter 90 value 78.491111 iter 100 value 78.460071 final value 78.460071 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 107.423548 iter 10 value 93.614958 iter 20 value 92.019603 iter 30 value 83.415260 iter 40 value 82.832124 iter 50 value 82.344305 iter 60 value 82.277735 iter 70 value 81.796052 iter 80 value 81.670833 iter 90 value 81.545381 iter 100 value 81.172493 final value 81.172493 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.479052 iter 10 value 94.503419 iter 20 value 93.725532 iter 30 value 93.189256 iter 40 value 93.102169 iter 50 value 85.603597 iter 60 value 83.990811 iter 70 value 83.211925 iter 80 value 82.396171 iter 90 value 81.620809 iter 100 value 81.047275 final value 81.047275 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.748511 iter 10 value 93.533276 iter 20 value 87.588890 iter 30 value 84.703092 iter 40 value 83.787588 iter 50 value 82.836815 iter 60 value 82.595655 iter 70 value 82.482436 iter 80 value 80.205009 iter 90 value 78.854710 iter 100 value 78.577812 final value 78.577812 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 128.210247 iter 10 value 94.962293 iter 20 value 93.314544 iter 30 value 86.754499 iter 40 value 86.578408 iter 50 value 85.045631 iter 60 value 81.774741 iter 70 value 80.314257 iter 80 value 79.831966 iter 90 value 78.944112 iter 100 value 78.599908 final value 78.599908 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 123.740338 iter 10 value 94.608412 iter 20 value 86.328062 iter 30 value 83.692764 iter 40 value 82.361475 iter 50 value 81.034414 iter 60 value 80.159356 iter 70 value 79.627811 iter 80 value 79.366527 iter 90 value 79.326023 iter 100 value 79.175876 final value 79.175876 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.909117 iter 10 value 93.485711 iter 20 value 86.166692 iter 30 value 83.377715 iter 40 value 81.533424 iter 50 value 81.161745 iter 60 value 79.742784 iter 70 value 78.893589 iter 80 value 78.454321 iter 90 value 78.346197 iter 100 value 78.288463 final value 78.288463 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.709213 iter 10 value 93.091361 iter 20 value 85.029883 iter 30 value 82.213167 iter 40 value 80.623169 iter 50 value 80.128979 iter 60 value 79.717201 iter 70 value 79.641286 iter 80 value 79.230399 iter 90 value 78.971633 iter 100 value 78.589546 final value 78.589546 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.959894 iter 10 value 94.259092 iter 20 value 88.243050 iter 30 value 85.124222 iter 40 value 83.797205 iter 50 value 83.289019 iter 60 value 81.903229 iter 70 value 81.263477 iter 80 value 80.748605 iter 90 value 80.124592 iter 100 value 79.898287 final value 79.898287 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 110.622379 final value 94.485813 converged Fitting Repeat 2 # weights: 103 initial value 94.597917 final value 94.485817 converged Fitting Repeat 3 # weights: 103 initial value 97.857976 final value 94.485941 converged Fitting Repeat 4 # weights: 103 initial value 98.890887 final value 94.486035 converged Fitting Repeat 5 # weights: 103 initial value 96.978305 final value 94.485961 converged Fitting Repeat 1 # weights: 305 initial value 103.399146 iter 10 value 94.489343 iter 20 value 94.484224 iter 30 value 93.948065 final value 93.294488 converged Fitting Repeat 2 # weights: 305 initial value 94.280160 iter 10 value 93.305156 iter 20 value 91.972069 iter 30 value 89.489418 iter 40 value 89.103431 iter 50 value 89.101256 iter 60 value 89.085001 final value 89.070371 converged Fitting Repeat 3 # weights: 305 initial value 97.892471 iter 10 value 89.997447 iter 20 value 89.917084 iter 30 value 89.829171 iter 40 value 89.642153 iter 50 value 89.641398 iter 60 value 85.913999 iter 70 value 82.979959 iter 80 value 82.486921 iter 90 value 81.089845 iter 100 value 81.053608 final value 81.053608 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 96.146312 iter 10 value 94.488676 iter 20 value 93.103505 iter 30 value 91.311714 iter 40 value 86.073474 iter 50 value 84.083709 iter 60 value 82.588028 iter 70 value 81.926766 iter 80 value 80.280757 iter 90 value 80.267990 iter 100 value 80.263837 final value 80.263837 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.856781 iter 10 value 93.777999 iter 20 value 93.773627 final value 93.773347 converged Fitting Repeat 1 # weights: 507 initial value 102.597672 iter 10 value 93.820377 iter 20 value 93.780956 iter 30 value 93.750108 iter 40 value 92.923585 iter 50 value 92.489790 iter 60 value 89.764490 iter 70 value 86.947474 iter 80 value 82.402274 final value 82.333533 converged Fitting Repeat 2 # weights: 507 initial value 94.506524 final value 94.492334 converged Fitting Repeat 3 # weights: 507 initial value 98.076968 iter 10 value 93.052292 iter 20 value 93.030484 iter 30 value 93.026005 iter 40 value 93.025676 iter 50 value 92.954224 iter 60 value 92.826295 iter 70 value 92.825353 final value 92.825167 converged Fitting Repeat 4 # weights: 507 initial value 119.221133 iter 10 value 91.749634 iter 20 value 91.659843 iter 30 value 89.728364 iter 40 value 89.536822 iter 50 value 89.263654 iter 60 value 88.764317 iter 70 value 88.720331 iter 80 value 86.619454 iter 90 value 82.923354 iter 100 value 78.930531 final value 78.930531 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 130.347330 iter 10 value 92.799883 iter 20 value 83.331613 iter 30 value 83.290254 iter 40 value 83.101529 iter 50 value 81.859159 iter 60 value 81.616866 iter 70 value 81.596636 iter 80 value 81.436269 iter 90 value 81.088535 final value 81.077008 converged Fitting Repeat 1 # weights: 103 initial value 100.482432 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 99.681379 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.103313 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 96.870936 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.365018 final value 94.466823 converged Fitting Repeat 1 # weights: 305 initial value 96.873432 iter 10 value 86.027859 iter 20 value 84.863488 final value 84.863483 converged Fitting Repeat 2 # weights: 305 initial value 111.702418 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.067900 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 105.949638 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 114.800555 final value 94.466823 converged Fitting Repeat 1 # weights: 507 initial value 96.936741 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 103.569025 iter 10 value 94.110661 final value 94.104010 converged Fitting Repeat 3 # weights: 507 initial value 95.030890 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 124.841863 iter 10 value 94.466823 iter 10 value 94.466823 iter 10 value 94.466823 final value 94.466823 converged Fitting Repeat 5 # weights: 507 initial value 97.444999 final value 94.466823 converged Fitting Repeat 1 # weights: 103 initial value 97.502810 iter 10 value 93.733521 iter 20 value 86.873680 iter 30 value 86.175851 iter 40 value 84.665432 iter 50 value 83.471248 iter 60 value 82.938215 iter 70 value 82.655896 iter 80 value 82.162174 iter 90 value 81.843699 iter 100 value 81.800211 final value 81.800211 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.775841 iter 10 value 94.538826 iter 20 value 94.155074 iter 30 value 85.263078 iter 40 value 84.587099 iter 50 value 83.803894 iter 60 value 82.848683 iter 70 value 82.536077 iter 80 value 82.525328 iter 90 value 82.519895 iter 100 value 82.150464 final value 82.150464 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.628826 iter 10 value 91.840251 iter 20 value 87.567700 iter 30 value 86.657943 iter 40 value 85.693259 iter 50 value 84.763549 final value 84.753323 converged Fitting Repeat 4 # weights: 103 initial value 96.418780 iter 10 value 94.478672 iter 20 value 93.168171 iter 30 value 87.827346 iter 40 value 85.097258 iter 50 value 84.593672 iter 60 value 83.795221 iter 70 value 83.668224 iter 80 value 83.614745 iter 90 value 82.474587 iter 100 value 82.082921 final value 82.082921 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.102974 iter 10 value 94.384661 iter 20 value 92.661626 iter 30 value 92.603551 iter 40 value 92.595264 iter 50 value 88.199122 iter 60 value 86.132228 iter 70 value 84.535841 iter 80 value 84.116220 iter 90 value 83.474304 iter 100 value 82.427964 final value 82.427964 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.745271 iter 10 value 94.944783 iter 20 value 94.811672 iter 30 value 92.510046 iter 40 value 87.849918 iter 50 value 87.452285 iter 60 value 86.457092 iter 70 value 83.389281 iter 80 value 82.775992 iter 90 value 82.479518 iter 100 value 82.291595 final value 82.291595 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.400427 iter 10 value 94.339293 iter 20 value 92.474895 iter 30 value 92.385098 iter 40 value 90.102705 iter 50 value 87.842916 iter 60 value 86.018763 iter 70 value 83.963082 iter 80 value 83.385926 iter 90 value 82.790736 iter 100 value 82.627213 final value 82.627213 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 125.411651 iter 10 value 94.547138 iter 20 value 90.037910 iter 30 value 87.267304 iter 40 value 83.400192 iter 50 value 82.840259 iter 60 value 81.911784 iter 70 value 81.076219 iter 80 value 80.970438 iter 90 value 80.816358 iter 100 value 80.792306 final value 80.792306 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.998882 iter 10 value 94.490729 iter 20 value 87.576985 iter 30 value 84.680840 iter 40 value 83.807027 iter 50 value 83.148885 iter 60 value 82.393805 iter 70 value 82.147966 iter 80 value 81.958534 iter 90 value 81.823128 iter 100 value 81.010226 final value 81.010226 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.686279 iter 10 value 94.621829 iter 20 value 89.249958 iter 30 value 83.833827 iter 40 value 82.373235 iter 50 value 81.609938 iter 60 value 81.188168 iter 70 value 80.997927 iter 80 value 80.751489 iter 90 value 80.683032 iter 100 value 80.644049 final value 80.644049 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 117.005020 iter 10 value 94.445913 iter 20 value 88.319088 iter 30 value 85.780340 iter 40 value 82.318553 iter 50 value 80.944157 iter 60 value 80.547288 iter 70 value 80.374065 iter 80 value 80.154537 iter 90 value 80.129407 iter 100 value 80.109944 final value 80.109944 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 112.974837 iter 10 value 93.489096 iter 20 value 91.257757 iter 30 value 86.455401 iter 40 value 81.897893 iter 50 value 80.940735 iter 60 value 80.409661 iter 70 value 80.167029 iter 80 value 79.906534 iter 90 value 79.875256 iter 100 value 79.864527 final value 79.864527 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.726096 iter 10 value 96.669259 iter 20 value 87.371445 iter 30 value 84.435735 iter 40 value 82.328111 iter 50 value 82.121580 iter 60 value 81.979586 iter 70 value 81.719467 iter 80 value 81.026369 iter 90 value 80.889249 iter 100 value 80.715715 final value 80.715715 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.284033 iter 10 value 94.661889 iter 20 value 93.632565 iter 30 value 88.149894 iter 40 value 86.396112 iter 50 value 85.475809 iter 60 value 82.916899 iter 70 value 81.843682 iter 80 value 81.192676 iter 90 value 80.497860 iter 100 value 80.244466 final value 80.244466 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.049224 iter 10 value 94.501296 iter 20 value 89.378721 iter 30 value 85.259156 iter 40 value 84.743723 iter 50 value 84.340279 iter 60 value 83.776662 iter 70 value 82.838875 iter 80 value 82.648095 iter 90 value 82.209613 iter 100 value 80.862649 final value 80.862649 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.675765 iter 10 value 94.486127 iter 20 value 94.439701 iter 30 value 90.032671 final value 88.675360 converged Fitting Repeat 2 # weights: 103 initial value 97.893829 iter 10 value 94.485878 final value 94.484219 converged Fitting Repeat 3 # weights: 103 initial value 107.382805 final value 94.485849 converged Fitting Repeat 4 # weights: 103 initial value 112.397002 final value 94.485807 converged Fitting Repeat 5 # weights: 103 initial value 94.679100 final value 94.485975 converged Fitting Repeat 1 # weights: 305 initial value 95.341839 iter 10 value 94.485828 iter 20 value 91.604625 iter 30 value 91.230499 iter 40 value 91.230085 iter 50 value 90.963290 iter 60 value 90.915010 iter 70 value 90.905837 iter 80 value 89.760061 iter 90 value 86.616235 iter 100 value 86.573036 final value 86.573036 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.212664 iter 10 value 94.489298 iter 20 value 94.265634 iter 30 value 94.253340 final value 94.253288 converged Fitting Repeat 3 # weights: 305 initial value 98.994969 iter 10 value 94.119298 iter 20 value 94.115123 final value 94.115117 converged Fitting Repeat 4 # weights: 305 initial value 102.171173 iter 10 value 94.488440 iter 20 value 94.460880 iter 30 value 94.265779 iter 40 value 94.205529 iter 50 value 88.345337 iter 60 value 86.761265 iter 70 value 86.735262 final value 86.734915 converged Fitting Repeat 5 # weights: 305 initial value 116.205871 iter 10 value 94.471582 iter 20 value 94.247108 iter 30 value 91.955802 iter 40 value 91.935711 final value 91.933995 converged Fitting Repeat 1 # weights: 507 initial value 96.249264 iter 10 value 94.474791 iter 20 value 94.463911 iter 30 value 94.097016 iter 40 value 88.634857 iter 50 value 84.912977 iter 60 value 84.904323 iter 70 value 82.838596 iter 80 value 82.510904 iter 90 value 82.507295 iter 100 value 82.506698 final value 82.506698 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.636000 iter 10 value 94.491721 iter 20 value 94.457938 iter 30 value 93.058066 iter 40 value 87.594494 iter 50 value 87.454666 iter 60 value 87.453161 iter 70 value 87.406560 iter 80 value 87.391515 iter 90 value 87.388832 iter 100 value 87.388204 final value 87.388204 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.297072 iter 10 value 91.559288 iter 20 value 87.408649 iter 30 value 87.405040 final value 87.404595 converged Fitting Repeat 4 # weights: 507 initial value 101.199091 iter 10 value 94.154143 iter 20 value 87.872947 iter 30 value 86.876189 iter 40 value 86.844689 iter 50 value 86.843541 iter 60 value 86.842913 final value 86.840095 converged Fitting Repeat 5 # weights: 507 initial value 97.115591 iter 10 value 93.333345 iter 20 value 88.406168 iter 30 value 87.084664 iter 40 value 85.549320 iter 50 value 84.546455 iter 60 value 84.382421 iter 70 value 84.244606 iter 80 value 84.244088 iter 90 value 84.239198 iter 100 value 84.194970 final value 84.194970 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.652463 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 97.846577 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 94.775891 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 103.515614 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 102.943222 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 104.872908 final value 93.244970 converged Fitting Repeat 2 # weights: 305 initial value 95.486957 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 102.592880 final value 93.836066 converged Fitting Repeat 4 # weights: 305 initial value 98.929897 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 101.162253 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 100.085656 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 107.185314 final value 94.032967 converged Fitting Repeat 3 # weights: 507 initial value 94.550532 final value 94.032967 converged Fitting Repeat 4 # weights: 507 initial value 99.969496 final value 94.032967 converged Fitting Repeat 5 # weights: 507 initial value 108.665309 final value 94.032967 converged Fitting Repeat 1 # weights: 103 initial value 97.043195 iter 10 value 94.058124 iter 20 value 90.738386 iter 30 value 86.501964 iter 40 value 85.781078 iter 50 value 85.506062 iter 60 value 85.112855 iter 70 value 84.897447 final value 84.897185 converged Fitting Repeat 2 # weights: 103 initial value 108.090695 iter 10 value 92.817074 iter 20 value 85.400900 iter 30 value 85.061541 iter 40 value 84.837713 final value 84.813493 converged Fitting Repeat 3 # weights: 103 initial value 101.162050 iter 10 value 94.155665 iter 20 value 93.964463 iter 30 value 86.635415 iter 40 value 85.998899 iter 50 value 84.933261 iter 60 value 84.929921 iter 70 value 84.858789 iter 80 value 84.813495 final value 84.813493 converged Fitting Repeat 4 # weights: 103 initial value 113.067707 iter 10 value 94.056292 iter 20 value 93.483850 iter 30 value 86.151354 iter 40 value 85.805564 iter 50 value 85.680748 iter 60 value 85.032830 iter 70 value 84.814213 final value 84.813493 converged Fitting Repeat 5 # weights: 103 initial value 105.658410 iter 10 value 94.085551 iter 20 value 86.805529 iter 30 value 85.986880 iter 40 value 85.230049 iter 50 value 85.005652 iter 60 value 84.905223 iter 70 value 84.813768 final value 84.813494 converged Fitting Repeat 1 # weights: 305 initial value 122.409753 iter 10 value 98.866288 iter 20 value 94.148631 iter 30 value 91.507630 iter 40 value 85.730567 iter 50 value 83.570867 iter 60 value 82.882979 iter 70 value 82.375402 iter 80 value 82.156173 iter 90 value 81.917088 iter 100 value 81.594169 final value 81.594169 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.899054 iter 10 value 91.788241 iter 20 value 87.728265 iter 30 value 87.641039 iter 40 value 87.395798 iter 50 value 85.648454 iter 60 value 84.858615 iter 70 value 84.689091 iter 80 value 84.625233 iter 90 value 84.585380 iter 100 value 84.501885 final value 84.501885 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 116.991100 iter 10 value 94.318520 iter 20 value 89.635534 iter 30 value 87.731216 iter 40 value 84.852828 iter 50 value 83.799615 iter 60 value 83.596155 iter 70 value 83.547073 iter 80 value 82.944457 iter 90 value 81.994517 iter 100 value 81.789949 final value 81.789949 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.816270 iter 10 value 90.709552 iter 20 value 87.038993 iter 30 value 85.632212 iter 40 value 84.566355 iter 50 value 84.477114 iter 60 value 83.709901 iter 70 value 82.588358 iter 80 value 82.309947 iter 90 value 81.906686 iter 100 value 81.581894 final value 81.581894 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 152.840240 iter 10 value 93.474712 iter 20 value 85.409588 iter 30 value 85.280781 iter 40 value 85.018606 iter 50 value 84.923872 iter 60 value 84.769737 iter 70 value 84.603364 iter 80 value 84.095828 iter 90 value 83.100040 iter 100 value 81.869200 final value 81.869200 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 113.947388 iter 10 value 94.090909 iter 20 value 92.291391 iter 30 value 91.808474 iter 40 value 91.401806 iter 50 value 91.169687 iter 60 value 90.612202 iter 70 value 88.169450 iter 80 value 85.746253 iter 90 value 83.239023 iter 100 value 82.658347 final value 82.658347 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.809718 iter 10 value 93.716887 iter 20 value 87.555234 iter 30 value 86.194263 iter 40 value 85.092489 iter 50 value 83.270410 iter 60 value 83.142688 iter 70 value 82.621387 iter 80 value 81.915453 iter 90 value 81.739467 iter 100 value 81.461272 final value 81.461272 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.648057 iter 10 value 94.351990 iter 20 value 94.071702 iter 30 value 93.484863 iter 40 value 91.800113 iter 50 value 90.119642 iter 60 value 86.086253 iter 70 value 84.047564 iter 80 value 82.744144 iter 90 value 82.255932 iter 100 value 82.086156 final value 82.086156 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.956948 iter 10 value 93.317602 iter 20 value 89.072370 iter 30 value 84.497241 iter 40 value 83.136255 iter 50 value 82.703395 iter 60 value 82.589483 iter 70 value 82.442466 iter 80 value 81.962255 iter 90 value 81.594338 iter 100 value 81.432739 final value 81.432739 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.590508 iter 10 value 95.847675 iter 20 value 85.459661 iter 30 value 84.584189 iter 40 value 82.706095 iter 50 value 82.314412 iter 60 value 81.813983 iter 70 value 81.532480 iter 80 value 81.441156 iter 90 value 81.374105 iter 100 value 81.351639 final value 81.351639 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.907414 final value 94.055013 converged Fitting Repeat 2 # weights: 103 initial value 94.705115 final value 94.054381 converged Fitting Repeat 3 # weights: 103 initial value 105.974277 iter 10 value 94.054776 iter 20 value 94.052932 final value 94.052919 converged Fitting Repeat 4 # weights: 103 initial value 94.897815 iter 10 value 94.054668 final value 94.033551 converged Fitting Repeat 5 # weights: 103 initial value 100.059348 iter 10 value 93.290710 iter 20 value 93.289525 iter 30 value 84.781529 iter 40 value 84.250283 iter 50 value 84.218597 iter 60 value 84.193133 iter 70 value 84.186501 iter 80 value 84.164814 iter 90 value 84.116381 final value 84.116053 converged Fitting Repeat 1 # weights: 305 initial value 94.756126 iter 10 value 94.057883 iter 20 value 93.775065 iter 30 value 85.603753 iter 40 value 85.504315 iter 50 value 85.446088 iter 60 value 85.434585 iter 70 value 85.297228 iter 80 value 83.765642 iter 90 value 83.470858 final value 83.467355 converged Fitting Repeat 2 # weights: 305 initial value 95.358708 iter 10 value 94.037244 iter 20 value 94.035316 iter 30 value 94.034612 iter 40 value 93.928319 iter 50 value 93.644897 iter 60 value 89.175847 iter 70 value 88.923289 iter 80 value 88.470302 iter 90 value 88.119352 iter 100 value 87.650547 final value 87.650547 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.931152 iter 10 value 93.294128 iter 20 value 88.574844 iter 30 value 85.154920 iter 40 value 84.105968 iter 50 value 83.914523 iter 60 value 83.785352 iter 70 value 83.784587 final value 83.784030 converged Fitting Repeat 4 # weights: 305 initial value 101.711201 iter 10 value 94.038584 iter 20 value 94.037418 iter 30 value 94.033934 iter 30 value 94.033934 iter 30 value 94.033934 final value 94.033934 converged Fitting Repeat 5 # weights: 305 initial value 96.098957 iter 10 value 94.057389 iter 20 value 93.997652 iter 30 value 91.967078 iter 40 value 91.914031 iter 50 value 91.913577 final value 91.913561 converged Fitting Repeat 1 # weights: 507 initial value 102.781809 iter 10 value 94.041615 iter 20 value 94.033942 final value 94.033639 converged Fitting Repeat 2 # weights: 507 initial value 99.470872 iter 10 value 94.041596 iter 20 value 93.818545 iter 30 value 86.351756 iter 40 value 84.608864 iter 50 value 83.429189 iter 60 value 83.353149 iter 70 value 83.350956 iter 80 value 82.253485 iter 90 value 82.153722 iter 100 value 81.831058 final value 81.831058 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 97.626031 iter 10 value 94.060653 iter 20 value 94.021957 iter 30 value 91.806724 iter 40 value 86.799918 iter 50 value 86.795618 iter 60 value 85.540451 final value 85.199781 converged Fitting Repeat 4 # weights: 507 initial value 112.119846 iter 10 value 93.935459 iter 20 value 87.284061 iter 30 value 87.254617 iter 40 value 87.248966 iter 50 value 87.246740 iter 60 value 87.138431 iter 70 value 86.844910 iter 70 value 86.844909 iter 70 value 86.844909 final value 86.844909 converged Fitting Repeat 5 # weights: 507 initial value 95.213689 iter 10 value 92.768486 iter 20 value 91.582178 iter 30 value 91.581080 iter 40 value 88.595271 iter 50 value 87.883846 iter 60 value 86.378519 iter 70 value 83.332532 iter 80 value 80.915491 iter 90 value 80.515032 iter 100 value 80.510717 final value 80.510717 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 138.257947 iter 10 value 112.623355 iter 20 value 109.966082 iter 30 value 105.567045 iter 40 value 104.817499 iter 50 value 104.095883 iter 60 value 102.091157 iter 70 value 101.681371 iter 80 value 101.582999 iter 90 value 101.540990 iter 100 value 101.408412 final value 101.408412 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 147.185559 iter 10 value 116.893234 iter 20 value 109.656973 iter 30 value 108.712405 iter 40 value 105.320119 iter 50 value 103.453842 iter 60 value 103.266186 iter 70 value 103.102218 iter 80 value 102.706879 iter 90 value 102.021007 iter 100 value 100.918762 final value 100.918762 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 133.107083 iter 10 value 120.450303 iter 20 value 117.088461 iter 30 value 109.788424 iter 40 value 107.803381 iter 50 value 105.829017 iter 60 value 104.793878 iter 70 value 103.699777 iter 80 value 102.893936 iter 90 value 102.709901 iter 100 value 102.623079 final value 102.623079 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 169.612593 iter 10 value 118.338456 iter 20 value 117.854405 iter 30 value 111.840729 iter 40 value 109.982217 iter 50 value 106.963705 iter 60 value 103.338646 iter 70 value 101.680088 iter 80 value 101.478999 iter 90 value 101.432455 iter 100 value 101.288630 final value 101.288630 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 148.516493 iter 10 value 118.222192 iter 20 value 116.649922 iter 30 value 110.269716 iter 40 value 106.370234 iter 50 value 105.677775 iter 60 value 105.507413 iter 70 value 104.434438 iter 80 value 103.875357 iter 90 value 103.740066 iter 100 value 103.654628 final value 103.654628 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon Aug 5 23:29:20 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 49.744 1.200 50.754
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 52.579 | 2.141 | 54.991 | |
FreqInteractors | 0.262 | 0.014 | 0.278 | |
calculateAAC | 0.046 | 0.010 | 0.055 | |
calculateAutocor | 0.432 | 0.058 | 0.491 | |
calculateCTDC | 0.086 | 0.003 | 0.088 | |
calculateCTDD | 0.614 | 0.024 | 0.640 | |
calculateCTDT | 0.251 | 0.008 | 0.261 | |
calculateCTriad | 0.442 | 0.026 | 0.469 | |
calculateDC | 0.101 | 0.010 | 0.111 | |
calculateF | 0.333 | 0.012 | 0.346 | |
calculateKSAAP | 0.097 | 0.009 | 0.107 | |
calculateQD_Sm | 1.949 | 0.131 | 2.087 | |
calculateTC | 1.765 | 0.174 | 1.952 | |
calculateTC_Sm | 0.309 | 0.021 | 0.330 | |
corr_plot | 51.738 | 2.166 | 54.217 | |
enrichfindP | 0.512 | 0.072 | 6.815 | |
enrichfind_hp | 0.073 | 0.012 | 1.429 | |
enrichplot | 0.385 | 0.008 | 0.393 | |
filter_missing_values | 0.001 | 0.000 | 0.002 | |
getFASTA | 0.091 | 0.014 | 1.241 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.001 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.079 | 0.005 | 0.085 | |
pred_ensembel | 15.858 | 0.293 | 13.566 | |
var_imp | 54.815 | 2.046 | 57.072 | |